T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:13 sec.
SCORE=84
*
BAD AVG GOOD
*
D.melanogaster : 87
H.sapiens : 86
B.hominis : 86
C.merolae : 82
C.muris : 81
C.owczarzaki : 81
C.parvum : 75
E.siliculosus : 82
H.arabidopsidis : 84
N.gruberi : 85
P.tricornutum : 86
P.ultimum : 85
S.parasitica : 86
T.trahens : 87
cons : 84
D.melanogaster M---PINFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVER
H.sapiens MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRER
B.hominis ------NINVGVMGHVDSGKTSLVKSLSAILSTASLDKNPQSRQR
C.merolae -----LNINVAVMGHVDVGKTTLVRFLSEILSTAALDKHPASREL
C.muris ---------------------------------------------
C.owczarzaki -----LNVNLGVLGHIDSGKTALAKALSTVASTAAFDKNPQSQAR
C.parvum R---QATINLGTIGHVAHGKSTVVRAVSGVQTVRFK----DEKER
E.siliculosus -----LNINVGILGHVDSGKTSLVKALSTVLSTASLDKNPQSRER
H.arabidopsidis -----VNVNVGVLGHVDSGKTSLVRALSTHLSTAALDKSPQSQRR
N.gruberi -----------IIGHVDSGKTSLCKALSTHASTAAFDKSPQSKER
P.tricornutum -----LNVNLGVLGHVDSGKTSLVKALSTLLSTAALDKSKQSRQR
P.ultimum -----VNVNVGVLGHVDSGKTSLVRVLSTQLSTAALDKHPQSQQR
S.parasitica -----VNVNVGILGHVDSGKTSLVRSLSTHLSTAALDKNPQSKAR
T.trahens -----LNVNVGLLGHVDSGKTSLAKALSTLASTAAFDKHPQSQVR
cons
D.melanogaster GITLDLGFSGLLV--------DAPAHLP-----------------
H.sapiens GITLDLGFSCFSV--------PLPARLRSSLPEFQAAP----EAE
B.hominis GITLDLGFSAFLS--------DIPSHIS-----------------
C.merolae GRTIDLGFSCTRL--------PASP--------------------
C.muris GITIDIALWKFET--------P-----------------------
C.owczarzaki GITLDLGFSSLSVT-------PMPEHLA-----------------
C.parvum NITIKLGYANAKIYKCTNPNCPPPKCYRSYGSNKEDEPMCEVP-S
E.siliculosus GITLDLGFSAFTV--------SLPEHLPHLTGHEVFAP----P-S
H.arabidopsidis GITLDLGFSSFRL--------DIRK--------------------
N.gruberi GITQDLGFSAFYS--------DSPL--------------------
P.tricornutum GMTLDLGFSCFFL--------DMPSHLQA----------------
P.ultimum GITLDLGFSAFRV--------PHEQLIKDG--------------S
S.parasitica GITLDLGFSSLQL--------PFTA--------------------
T.trahens GITLDLGFSALRV--------PLPPAL------------------
cons . * .:.
D.melanogaster ---QGE-QLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQK-
H.sapiens PEPGEP-LLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTK-
B.hominis -SDKYK-YIQYTLVDCPGHASLIRTILGGAQIIDMLIIVIDCLK-
C.merolae VVVQLE-GLQLTWIDCPGHASLLRTVLLGASVMDLLLLVVDASA-
C.muris -------RYEYTVIDAPGHRDFIKNMITGTSQADVALLVVPADRF
C.owczarzaki -DLAYD-RLQFTLVDCPGHADLIRTIIGGAQIIDMMMLVVDVNK-
C.parvum CNHKMQLLRHVSFVDCPGHDILMSTMLNGAAVMDAALLLVAGNE-
E.siliculosus TAAAFT-RTLPTQVDCPGHASLIRTIIGGAQIMDMMLLVVDATK-
H.arabidopsidis --GGPS-FLQVTLVDCPGHTSLFQTVLGGAAIIDTVVLVTDCRK-
N.gruberi --SEYD-RIQYTLVDCPGHASLIRTIIGGAQIIDFMVLVIDAVK-
P.tricornutum SYPDKK-NLQITLVDCPGHASLIRTIIGGAQIIDMVLLVVDAVK-
P.ultimum AAIENT-DIQITLVDCPGHASLFKTILGGARIIDMVLLVVDAQK-
S.parasitica ASGEAY-TAQLTLVDCPGHASLIKTVIGGAHIIDMALLVIDAVK-
T.trahens --DKYD-EIQFTLVDCPGHASLIKTIIGGASIIDIMVLVVDAKA-
cons : :*.*** :: .:: *: * :::
D.melanogaster ----GKQTQTAECLIIG-ELLQ---KKLIVVINKIDVY-PE--NQ
H.sapiens ----GMQTQSAECLVIG-QIAC---QKLVVVLNKIDLL-PE--GK
B.hominis ----GIQAQTAECIVIG-EITT---NKAIIALNKIDLI-PE--AE
C.merolae ----GIQAQTLECLALA-AIFT---KHVVVALHKCDRI-GT--DA
C.muris EGAFSKEGQTREHALLAFTLGV---KQMIVGINKMDTC-D--Y--
C.owczarzaki ----GIQTQTAECLVIG-EIMC---DILVVALNKIDQI-PE--DQ
C.parvum -T--CPQPQTSEHLAAV-EIMKL--KHIIILQNKVELI-KE--AQ
E.siliculosus ----GIQAQTTECVVIG-EAVMSSGADVIVVLNKVDLI-PE--QE
H.arabidopsidis ----GLEAQTIESLLLA-SLVCP--RKLVIVLTKTDLL-SALDVE
N.gruberi ----GVQTQTAECIVIG-EISC---NNLIVALNKVDMI-PA--DQ
P.tricornutum ----GWQAQTTECLVLA-ELTS---PYLVVALNKADQF-PP--PE
P.ultimum ----GLQPQTIESLLVA-ELAVA--HHVVIALNKVDLLLPE--SE
S.parasitica ----GIQMQTIESTVLA-EIAT---SHVIVVLNKVDLL-T--DK-
T.trahens ----GFQTQTAECLVIG-ELTA---DTLMVALNKIDLF-PE--EK
cons : *: * :: * :
D.melanogaster RASKLEKLRL--RLAK-TLE----ATTFGGQVPICAVSALQG---
H.sapiens RQAAIDKMTK--KMQK-TLE----NTKFR-GAPIIPVAAKPGGPE
B.hominis RSDRIKTVIS--SLQ-KTLSK----TRFK-NASIVWMCYV-----
C.merolae RRTAFERHQQ--HQH-SILFPA---ADN---DDIGGVVALAQAVQ
C.muris KQSRYDEIHN--EVE-GYLKKV--GYNIE-KIPFVAISGFVG---
C.owczarzaki RAQTIEKARLXMKRAL-VLFVL--VINLGGGISCCTNNRLDA---
C.parvum AQEQYK------QIK-DFVAG----TSAQ-DAPIIPISAVLK---
E.siliculosus RKARLRQAET--EIA-AQLAG----TKLS-SASFVSCAAAVGGEK
H.arabidopsidis RAAAIGAVTS--EVQ-TFVATHFSSLKDV-TIPVVPVVVGTGH--
N.gruberi REDRVDKIKK--SLIKNVFS----QTKFK-NPPIVSVCADPR---
P.tricornutum RDQLLEQAAA--KIR-DRLKA----TRFA-NAPIVGVAACVGGEK
P.ultimum REVRIRSLET--EIQ-RVLDAKFPRLRGQ-NVPIVAVAAAPA---
S.parasitica -ATQLPAMLA--TIR-TFLSSS---PTLQ-DCPIVPVAAGDAD-G
T.trahens RASKVAKMTK--RVAA-TLK----PTAFA-NSDILPVSASSG---
cons .
D.melanogaster -------THIAELREVLREA-YFQP--QRNL-ADP-LFMYVDHCF
H.sapiens APETEAPQGIPELIELLTSQ-ISIP--TRDP-SGP-FLMSVDHCF
B.hominis ---------------------FKID--SCIC-ATP-LYFIYDHCF
C.merolae AA---AE---QALASGLWQ----ER--LRLQ-RKPYALFAVDHAF
C.muris -------DNMVEKSDKMPWY-KEPP--KRPT-EKP-LRLPLQDVY
C.owczarzaki -------GDARSCQDVRHHQVWSMPRQRHDS-AAP-FVFAVDHCF
C.parvum -------FNIDVLCEYICTQ-IPIP--IRDFT-SS-PRMIIIRSF
E.siliculosus TAASTPPAGIDTVAGELSRR-ARVP--SRRA-SAP-LYFAFDHCF
H.arabidopsidis -----KTEGIPHLLEVLRTH-LQAP--ERDT-SGD-FRLAVDHCF
N.gruberi -------EESESI-TKEQKH-VKIS--EKDE-NEP-FLYMVDHCF
P.tricornutum LEVRNETYNMETLVQTLQDK-LPPP--KRTP-EGS-FYFSVDHCF
P.ultimum -------VGISTLVETIRSH-LYLP--ERNP-TGP-FSLAIDHCF
S.parasitica AR---APQGMPDLLATMQRH-LHLP--TRSG-DGP-LCYAIDHCF
T.trahens -------DGLSDLVDALTAA-VRLP--TRNEAEDA-FLFAIDHCF
cons :
D.melanogaster GIKG--------QGTVCTGTLLQGKVQVNNVIELPALGEQRKVKS
H.sapiens SIKG--------QGTVMTGTILSGSISLGDSVEIPALKVVKKVKS
B.hominis QLAG--------KGCVMTGTVLSGSVSVNDEIEFPSLHLTRKVKS
C.merolae EVTG--------QGTVLTGILLTGRLRIGEVIHAAFVGDARSVRS
C.muris KIGG--------VGTVPVGRVETGIIKPGMNVTFAPVGITTEVKS
C.owczarzaki AIKG--------QGTVLTGTALSGQIQVNENIEIPTAKLSRKIKS
C.parvum DVNKPGEDAQNMRGGVAGGSIIKGVLKIGDEIE------------
E.siliculosus SVRG--------QGTILTGTVLTGEVKVNQLVELPSLRLQKKVKS
H.arabidopsidis AVPG--------HGTVLTGTVLSGALSKGSELELLPSGMKTTVKT
N.gruberi TIKG--------KGTIITGTVLQGSVSIGKTIQIPSIGEEKKVKS
P.tricornutum SIRG--------RGTVLTGTVLNGAASVNDVLEFPTLGLDRKIKS
P.ultimum AIQG--------NGTILTGTVLSGSVKVNDEVEIPSLQVVKKVKS
S.parasitica PLRG--------KGTVLTGTVLSGTVRVNDTIAIPILGTEKKVKS
T.trahens QVKG--------QGTVVTGTIQRGSVAVGQTIEFPALGLSKKVKS
cons : * : * * . :
D.melanogaster IQMFRKNVTSASMGDRIGLCVTQFNAKLLERGIITQ-PGYLKPIY
H.sapiens MQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA-PESLHTVH
B.hominis IQMFHKGIDKVLKGDRAGICVQSFDFK-SERGEACA-VGSLKAMQ
C.merolae IQVYRSSVSEIVAGDRAALGL------------------------
C.muris VEMHHEQLSEAGPGDNVGFNVKNVSIKDIKRGYVAS-DGYLSPIF
C.owczarzaki IQMFHRPVQQITAGDRAGICVTQFDASTLERGYACA-AGAVIFAH
C.parvum ---------------------------------------------
E.siliculosus MQMFRKPVSIARAGDRVGMCVASLDAKLMERGVVTT-PGSVRPIS
H.arabidopsidis LQVFRQDVERCVQGDRVGLRVNGLDPALVERALAVSPPGSLPAVT
N.gruberi IQMFKTPVDKAIKGDRIGIAVTKLDSKKLERGFACD-KGYIEIVD
P.tricornutum IQMFKRQVQRIQQGDRAGVCVSNLDAKLLERGIAAT-PGAVQLLK
P.ultimum MQMFKQSVTSATQGDRVAIRVNGLDASLVERGMAIT-PHSMPYVT
S.parasitica LQMFHTSVEKAIQGDRVGLRLHGLDAATLERGLAIT-PKSLSFVL
T.trahens MQMFKAPVERAVQGDRLGICVAQLNAKLLERGLACA-PGTIRAVS
cons
D.melanogaster AVCLQFKPIRYYKE-VIKSMRKMHISVGHNTVMANVTLFRDTDG-
H.sapiens AALISVEKIPYFRG-PLQTKAKFHITVGHETVMGRLMFFSPAPD-
B.hominis NILIRLKKIRFYKG-DVKSGSTFSVSIGHHTVSATITLFSDMEK-
C.merolae ---------------------------------------------
C.muris KVPAKIR--------------------------------------
C.owczarzaki ALIARVDKVRFFKL-PVLSKSRFHVSMGHETVMGTASFFTRDGE-
C.parvum ---------------------------------------------
E.siliculosus AAIALVRKVPAFTG-QCLSGAYCHVSLGHSTAMATATFFGASELK
H.arabidopsidis QVVIAVARVPLFQGGACKSGAKCHATVGHATVIATATFFARLGRT
N.gruberi TILANASRIRFFKK-EIKNSAKYHISIGHETVMGNVSLIARAKK-
P.tricornutum GAIALVRKVPYYVG-TLHSGSKFHISVGHTTIMATVTFWGAVELL
P.ultimum QVVVPVHQIAFFQG-TCKSGAKFHATINHTTVVAIATFFSPMHGA
S.parasitica NLVLQVHRVRFFGL-DCESGAKVHVTVGHSTVLAKATFFHGSHA-
T.trahens AAVVRVSRIPYFRG-EIKSRAKFHLTVGHETVMATLQFFRSVGP-
cons
D.melanogaster TT-------------------------STFQLDKEYEYMED-V--
H.sapiens NFDQE------------------PI-LDSFNFSQEYLFQEQ-Y--
B.hominis EGLM-----------------------NGAKPDSPHHHRSS----
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki GN-------------------------ARFEVDKEYAFAEE-L--
C.parvum ---------------------------------------------
E.siliculosus NGLL-----------------------GLFEHSADGLKALEALRD
H.arabidopsidis EGDAG------------------NILEDMFDPLALYEYVPD-L--
N.gruberi EGLSS----------------------NIFDTTVEYSLLEE-L--
P.tricornutum -VDTKPSKRYVGSSSLGGDADMAGLPRMTFSFEEEFIHQDD-L--
P.ultimum KFTT----------------------KTQFEPLRLYEYVAQ-I--
S.parasitica SFAV----------------------E-----NTEYRYLAT-L--
T.trahens A--------------------------HVFSYDDEYLDVSE-L--
cons
D.melanogaster -------------QP------AEVQ----------------HNDV
H.sapiens -------------LS--KDLTPAVTDNDEADKKAGQATEGHCPRQ
B.hominis -------------------LFPS-F---------------SHIAT
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki -------------GR------PPQENAS-------NSGQPPAPLA
C.parvum ---------------------------------------------
E.siliculosus AGQGQDLSLSSENSIAGADDEVCVD---------------ERPLL
H.arabidopsidis -------------DFGYSVQDGKNS---------------TEATT
N.gruberi -------------TE------TT-Y----------------QEKD
P.tricornutum -------------------LESLDG---------------QESLL
P.ultimum --------------------EPIAD---------------ANSGA
S.parasitica -----------------------PA---------------SATDH
T.trahens -------------EG------PEAY---------------PTGST
cons
D.melanogaster IYALLQFESPVLSPPHSTLIASKLDMD----VHSTSCRLAFWGRI
H.sapiens QWALVEFEKPVTCPRLCLVIGSRLDAD----IHTNTCRLAFHGIL
B.hominis LWALLQLEQTIYAPLGALLIGSQLNSQVD----G-TCRIAFYAKV
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki TFALIELDHPVACLSNALLIGSRLDLDPD--VHTKACRLAFSGRV
C.parvum ---------------------------------------------
E.siliculosus QYCHLTFHTPVITPPSSVVLGSRLDSTSS----SPNKTEAAHP--
H.arabidopsidis IFALLQFERAVFCPPATLVVCSRLDLDAK----RFSCRLAFYGT-
N.gruberi VFVKIEFEKPVCCYPNSNYIASKLDTD----INANMCRLAFNGKV
P.tricornutum HWALLDFQIPVHCPMDSLVIGSRLDTVDNSTGSASACRLAFSGRL
P.ultimum YFALLQFDQPVLCPRDALVICSRLDLDPK----KFACRLAFHGHV
S.parasitica LFVLLQLEREILVPPFSHVICSRLDTTVSQ---SNVCRIAFYGPV
T.trahens TYAVLELESPVLCAPDAMIIGSRLDSD----VDGNVCRLAFSGSL
cons
D.melanogaster AWQTHSSKYF-QEELPKLRIFKRKQKVGSIQRVVNS-------SE
H.sapiens LHGLEDRNYA-DSFLPRLKVYKLKHKHGLVERAMDD-------YS
B.hominis IQALSPK---K-EDLSVLRVFKPKQRTAIVDRIVNE-------RE
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki HEALTDKSYR-ETFLPKLKVFKRKSRTGTVER-------------
C.parvum ---------------------------------------------
E.siliculosus -TALD-F---G-TQAGQLKLFTEKRKTGVVFRVTPNDQTGGGAVE
H.arabidopsidis ---------------------------------------------
N.gruberi IKMWNKSNVSKEQLVNSLPVFKYKEKKAVVDRVVDA-------NT
P.tricornutum MQSVDPG-----KDISKLRLYTPKERRGTISRLGDPH-------K
P.ultimum QTTSAGTDYVY-ASIDSLRIGKVKSREGNVDKVITTKDS--SIRD
S.parasitica VATLDNVL-------------------------------------
T.trahens VAPFDSDT------PWALKIFRVKAKVGHITRLKNE-------RE
cons
D.melanogaster VIVQNLFKDA-K-RDLYVGKNVELSTGEKGRIERTFGQTSKVAIT
H.sapiens VIGRSLFKKETN-IQLFVGLKVHLSTGELGIIDSAFGQSGKFKIH
B.hominis VIGTNLTEKGG-TIAAFVGLDVVTKSGLKGRIDAPFGKSGKFKVV
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
E.siliculosus VFGKDLFKKET-NMPPFVGMLLLTEGGSVGHLESTFGKAGRFKAR
H.arabidopsidis ---------------------------------------------
N.gruberi IIGKNLLTSKTQSLQFFIGKKIDILIDDQPRFSATLNAQITVSQD
P.tricornutum VFGSDLFKKET-NMKAFFGMKVQTERNEIGEIKSSFGTSGKYRVF
P.ultimum VIAHSMFLKDV-DWTA------GGVKGERGAIEKPFGKAGKVRVA
S.parasitica ---------------------------------------------
T.trahens AICKGLFPRART---------------------------------
cons
D.melanogaster FQDALSPETI----------------------------SNVKNVK
H.sapiens IPGGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVV
B.hominis FSEEHHLEKNEEFVIN-----------------------------
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
E.siliculosus FPAGTLVKPRPVVLEAIARRVRAERGEGSGNAS------------
H.arabidopsidis ---------------------------------------------
N.gruberi ---------------------------------------------
P.tricornutum FPAGT----------------------------------------
P.ultimum F--------------------------------------------
S.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
D.melanogaster VLLNCKKYVFNK--QAGLFQ
H.sapiens LSLTFKRYVFDTHKRMVQSP
B.hominis ----FKRYVFDK--EKKIIQ
C.merolae -------------------T
C.muris -----------------PLS
C.owczarzaki -------------------V
C.parvum -------------------V
E.siliculosus ----SSRKSSQS--PEVVIS
H.arabidopsidis -------------------V
N.gruberi ---------------FTDAI
P.tricornutum --------------EAKEEK
P.ultimum ------------------PE
S.parasitica ------------------LC
T.trahens ----------------RACT
cons