T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:1 sec.
SCORE=85
*
BAD AVG GOOD
*
Secp43.M.muscul : 81
Secp43.B.homini : 79
Secp43.C.merola : 89
Secp43.C.muris : 80
Secp43.C.owczar : 87
Secp43.C.parvum : 88
Secp43.E.silicu : 82
Secp43.H.arabid : 81
Secp43.N.gruber : 92
Secp43.P.pallid : 84
Secp43.P.tricor : 80
Secp43.P.ultimu : 82
Secp43.S.parasi : 92
Secp43.T.trahen : 90
cons : 85
Secp43.M.muscul MAASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLTGIP
Secp43.B.homini ---------------------------------------------
Secp43.C.merola --VSLYVGDLQPDVVEQNLFELFSSVG--PVVSVRVCRDVVTRRS
Secp43.C.muris VSASLYVGDLDPDVTETMLYEIFNSVA--VVSSVRICRDALTRRS
Secp43.C.owczar MSTCLWFGDLEPSWDESFISSLFGQAG-EPVVGVKIIKNRLTGGP
Secp43.C.parvum VSASLYVGDLDADVTETMLYEIFNSVA--VVSSVRICRDALTRRS
Secp43.E.silicu A-KTLWLGDVQPDWTEEYVESLFSSIV-GQELEVKLIRDRHRGIV
Secp43.H.arabid ---TLWMGDIQMHWDEAFIASLFASAA-E-QPVIKLIRDKVTGYP
Secp43.N.gruber A-RTLWMGDLDDSMDDEYVKKLFANDIRPSINSVKIIKDRNTGKS
Secp43.P.pallid --TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRS
Secp43.P.tricor ---SLYVGDLAPDVNESLLFEIFSAVG--PVASIRVCRDAVTRRS
Secp43.P.ultimu ---TLWMGDIQMHWDEAFISSLFAATG-E-QPVVKLIRDKVTGYP
Secp43.S.parasi ---TLWMGDVQINWDEAYVSSLFDAFG-H-LPTVKLIRDKVTGYP
Secp43.T.trahen -----------------------------TVVSAKIILDAETHGS
cons
Secp43.M.muscul AGYCFVEFADLATAEKCLHKINGKP---LPGATPAKRFKLNYATY
Secp43.B.homini -------------------------------------FRLNFGGN
Secp43.C.merola LGYAYVNFQNPEDAERAIDVLQFYEGPLTKNK----PIRIMWKRS
Secp43.C.muris LGYAYVNYNSVADAERALDTLNFT---CIRSR----PCRIMWCLR
Secp43.C.owczar AGYCFVDFGNSDRAVRVLHALNGAQ---IPGLDPSRRFRLNLALY
Secp43.C.parvum LGYAYVNYNSVADAERALDTLNFT---CIRGR----PCRIMWCLR
Secp43.E.silicu AGYGFIDFRNHETAQLVLDSLNGKP---IEGT--SLRYRLNWGAG
Secp43.H.arabid AGYGFLEFPTQRGAQQVLEMFNGLMWC-IENT--VHRFRMNWGAG
Secp43.N.gruber IGYGFVEFASIEIAKAVLESYAGKP---IPTL-PNKIYRLNWAAQ
Secp43.P.pallid LGYAYVNFFNSIDAERALDTLNYS---QIMGR----PCRIMWSLR
Secp43.P.tricor LGYSYVNFHQMADAERAMDTMNFS---MIKGK----PCRIMWKTS
Secp43.P.ultimu AGYGFLEFPTQRGAQLVLETYNGQV---IPNT--LHRFRMNWGAG
Secp43.S.parasi AGYGFLEFDSPEAASEVLSTLNGQP---IPNT--PHRFRLNWGAG
Secp43.T.trahen AGYGFVEFETREGAQAAMPILQGR---RVRAL----RIRINWAVQ
cons ::
Secp43.M.muscul G----KQPDN--SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG
Secp43.B.homini S----RNLNL--GDNYCLYIGDLESSVTDTQLYTIFRDKYLSFCG
Secp43.C.merola D----PSQRR--NPEGNIFIKNLDKSIDNKALYDTFS-TFGTITS
Secp43.C.muris D----PASRR--NNEGNVFVKNLDKSIDNKTLFDTFS-LFGNIMS
Secp43.C.owczar S----GATRN--EPEYSLFVGDLTADVTDFQLHSFFKQLYASCKT
Secp43.C.parvum D----PASRR--NNDGNVFVKNLDKSIDNKTLFDTFS-LFGNIMS
Secp43.E.silicu G----KRIEQ--APEYSVFVGDLSPEVTDAELKATFLGKYTSVLG
Secp43.H.arabid G----RRIET--SDDHSIFVGDLAPDVGDEVLLSTFNARFTSVRG
Secp43.N.gruber N----QGCGK--ENIVSIFVGDLAPDVNDYMLEQTFRNRYPSVRG
Secp43.P.pallid D----PTKRK--SNVGNIFVKNLDKQVDNAMLFDTFS-KFGNILS
Secp43.P.tricor YPAKLSQIVR--FQGVNLYVKNLDDSVTDDMLRDEFA-VMGTITS
Secp43.P.ultimu G----RRIET--GDDHSVFVGDLAPDVSDELLLTTFSTRFSSVRG
Secp43.S.parasi G----KRLES--MEDHSVFVGDLAGDVTDDVLFSTFSAKYASVRG
Secp43.T.trahen G----SRRVADEDGLHSLFVGDLCKSVDDDMLHDAFA-HFSSLTS
cons ::: :* .: : * * .
Secp43.M.muscul GKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGL------
Secp43.B.homini AKIMRETGTSVSKGYGFIQFRARDEAETALKEMN-----------
Secp43.C.merola LRIMRDE-KGVSKGFGFVAFSHPDEAIKAVTEMNQRI-V------
Secp43.C.muris CKIATDS-EGNSLGYGFIHFEHPESAKEAIARLNVLI-CWFGSRC
Secp43.C.owczar AKVVVDQ-AGTPKGFGFVRFTDSNDCLRALLEMNGAVGC------
Secp43.C.parvum CKIATDV-EGKSLGYGFIHFEHADSAKEAISRLNGAV-L------
Secp43.E.silicu AKVVTNPMTGSSKSFGFIRFGDEQERDEALTAMNGAE-C------
Secp43.H.arabid AKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVF-C------
Secp43.N.gruber AKVVMDPKSGISKGYGFVKFADEDDMMRSMTEMQGVY-I------
Secp43.P.pallid CKIEYE--KGVSKGYGYVHFETQESSDRAIQGVNGTM-L------
Secp43.P.tricor ARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKL-I------
Secp43.P.ultimu AKVVIDPVTRMSKGFGFVRFGNKEEADQALQTMNGVY-C------
Secp43.S.parasi AKVVLDQMSRISKGFGFVR--------------------------
Secp43.T.trahen ARVMWDVRTGTSREFGFVSFRDASDAERALKTMGGTM-L------
cons :: : . :*::
Secp43.M.muscul --------------------------------------------G
Secp43.B.homini ---------------------------------------------
Secp43.C.merola --------------------------------------------G
Secp43.C.muris YRDYVIRNFAIRYNIFCYDIWYLRFWIRLIFISRGYKSYNDAPIS
Secp43.C.owczar --------------------------------------------G
Secp43.C.parvum --------------------------------------------G
Secp43.E.silicu --------------------------------------------C
Secp43.H.arabid --------------------------------------------S
Secp43.N.gruber --------------------------------------------S
Secp43.P.pallid --------------------------------------------C
Secp43.P.tricor --------------------------------------------A
Secp43.P.ultimu --------------------------------------------S
Secp43.S.parasi ---------------------------------------------
Secp43.T.trahen --------------------------------------------G
cons
Secp43.M.muscul CKPVRLSVAIPKASRVKPV-E------------------------
Secp43.B.homini ---------------------------------------------
Secp43.C.merola QKPIYVALAQRKDQRR-----------------------------
Secp43.C.muris KRPCCCSYCSRKYNFKNRTRTLNIVCKSNFNETTIGKLFIFYKIA
Secp43.C.owczar GKPMRVSAATPKRPDLQQQ-Q------------------------
Secp43.C.parvum DRPIYVGKFQKKAERFSEK-E------------------------
Secp43.E.silicu GRPIRVAPATKRTSVQVPW-Y------------------------
Secp43.H.arabid SRPMRVSVATERTARTTPT-H------------------------
Secp43.N.gruber SRPVKISH-------------------------------------
Secp43.P.pallid GKPITVEQFVSKVERFKEK-N------------------------
Secp43.P.tricor NKPIFVALAQRRATAIRPL-T------------------------
Secp43.P.ultimu SRPMRVSVATDRNGKPRSG-G------------------------
Secp43.S.parasi ---------------------------------------------
Secp43.T.trahen RRPIRVNRANK----------------------------------
cons
Secp43.M.muscul -YSQMYSYSYNQY-YQQ---YQNYYAQ-WGYDQNTGSYSYSYPQY
Secp43.B.homini ---------------------------------------------
Secp43.C.merola ---------------------------------------------
Secp43.C.muris NFYCLYLHSYSTFY-RKLYKYCRNFIN-WRF----K--KYNYTGK
Secp43.C.owczar -YQQLQQQQQQQQ-Q------------------------------
Secp43.C.parvum -MSRVCQY-------------------------------------
Secp43.E.silicu -YSTLHTHIHADS-PQQ---HRSGVSDEVDANALLHITAVLFCE-
Secp43.H.arabid -T-NYYAQQYGQY-QTG---YQTVLPM-LGQNFYGYNAAYSYPQY
Secp43.N.gruber ---------------------------------------------
Secp43.P.pallid -EHKLFIKNIDELA-TG---YHHYYCQ-W----------------
Secp43.P.tricor -TSDVEVYSFESFV-ED---FSKTYAS-PGFRVRKEDIQIELAGM
Secp43.P.ultimu ----YY-QQYPNYQQSG---YQNY---------YGYG--GYYPQY
Secp43.S.parasi ---------------------------------------------
Secp43.T.trahen ---------------------------------------------
cons
Secp43.M.muscul G------------------------YTQSTMQTYEEVGDDALEDP
Secp43.B.homini ---------------------------------------------
Secp43.C.merola ---------------------------------------------
Secp43.C.muris S------------------------IKRYRDNT------------
Secp43.C.owczar ---------------------------------------------
Secp43.C.parvum ---------------------------------------------
Secp43.E.silicu -EESESYIYMKVTKRALQDPV-ML---------------------
Secp43.H.arabid QQGAAGYGYGAYGQYALQGAQPQVDYQQQQLQQQPQQ------KR
Secp43.N.gruber ---------------------------------------------
Secp43.P.pallid --------------------------R--RDNQ------------
Secp43.P.tricor R------------------------ATRRQSSSRESSGVDDGFDP
Secp43.P.ultimu QQVGGYGGYGGYG---------S--YDQQGSQQHDEIGEDPVFGT
Secp43.S.parasi ---------------------------------------------
Secp43.T.trahen ---------------------------------------------
cons
Secp43.M.muscul APQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
Secp43.B.homini ------------------------------------------G
Secp43.C.merola ---------------------------------------AQIE
Secp43.C.muris -------PTT------------------------YFKMGDSIL
Secp43.C.owczar ---------------------------------------QQQQ
Secp43.C.parvum -------------------------------------SYSYLQ
Secp43.E.silicu ----DSLS--------------------------TRAFFFASS
Secp43.H.arabid IAAVRPP--------------------HTPLLEIVKSYCPRPM
Secp43.N.gruber ------------------------------------------A
Secp43.P.pallid --------QQ------------------------QQHYHTSKY
Secp43.P.tricor GQTHEIRPAR------------------------SMEMTDSEE
Secp43.P.ultimu AAQLAFA--------------------------SAGKQFKPRS
Secp43.S.parasi ------------------------------------------F
Secp43.T.trahen ------------------------------------------K
cons