TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2_D.Rerio
         (447 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    82   8e-16

>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 75/307 (24%), Positives = 130/307 (42%), Gaps = 35/307 (11%)
 Frame = -2

Query: 108    VIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQ- 166
              ++P + GG ++VQT D+F  +V+DP+  G+I   + LSD++AMG T      M L+V+  
Sbjct: 128631 ILPNKAGG-AIVQTIDYFREIVKDPFTFGKIVAVHALSDIHAMGAT--PQTAMTLAVAPF 128461

Query: 167    KMNEKERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIG-GVASVVCQPNDFILPD 225
                +E+  +  L  ++ G  D  ++    + GG T     +  G  V      P   +   
Sbjct: 128460 AADEEVTESTLLHLLSGVSDILQDENVQLVGGHTCEGLELACGLSVQGYTDNPKLLLRKQ 128281

Query: 226    GAVPGDVLVLTKPLGTQVAVNAHQWLDIPEKWNKIKLVISREEVEQAY-QEAMLNMATLN 284
              G   GD +VLTKP+GT     A                  R   + +Y  EA+ +M   N
Sbjct: 128280 GGAIGDKIVLTKPIGTGALFAADM----------------RARCKGSYMSEALDSMIHSN 128149

Query: 285    RTAAAL-MHKFNAHAATDITGFGIIGH-----ARNLAKQQKNDVAFVIHNLPIISKMAAI 338
                A+ + M      + TD+TGFG+IGH       N   ++ + +  V++   I      +
Sbjct: 128148 CHASQVAMRAKGIRSCTDVTGFGLIGHLLEMLMANETVKELDSIGAVVNIGDIDFLRGGL 127969

Query: 339    SKAGGNLFGLLQGTSS--------------------------ETSGGLLICLPREQAARF 372
                +   +F  LQ  +                           +T+GGL+  +    A+ F
Sbjct: 127968 EASANGIFSTLQSQNGRNRRAIVNHTEAAEKYPVKYPLLFDPQTAGGLMFFVDALSASEF 127789

Query: 373    CAEMKSS 379
               AE++++
Sbjct: 127788 LAELRAA 127768


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,834,572
Number of Sequences: 31
Number of extensions: 146975
Number of successful extensions: 567
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 52
length of query: 447
length of database: 7,911,228
effective HSP length: 101
effective length of query: 346
effective length of database: 7,908,097
effective search space: 2736201562
effective search space used: 2736201562
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)
