TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2_D.Rerio
         (447 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   276   2e-74

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  276 bits (707), Expect = 2e-74
 Identities = 148/304 (48%), Positives = 188/304 (61%), Gaps = 5/304 (1%)
 Frame = +2

Query: 124    FFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEKERDLVLPLMMKG 183
              FF+P V+DPY+MG+IACANVLSDLY+ GI ECDNMLMLL+ S  M  + R+     +++G
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 184    FRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNDFILPDGAVPGDVLVLTKPLGTQV 243
              F D     GT V GGQTV NPW +IGGVA+ + + ++ I+P  AVPGDVLVLTKPLGTQV
Sbjct: 556085 FNDHCNLAGTKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLGTQV 556264

Query: 244    AVNAHQWLDIPEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAALMHKFNAHAATDIT 303
                N HQW+  PEKW KI  + + EE  + +  A  +MA LNR  A LM K+ AHAATD+T
Sbjct: 556265 CANFHQWIRQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAATDVT 556444

Query: 304    GFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLFGLLQGTSSETSGGLLIC 363
              GFGI GH+ NLAK Q   V F IH LPII  M  I     N + L +G S+ETSGGLLI 
Sbjct: 556445 GFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGGLLIA 556624

Query: 364    LPREQAARFCAEMKSSRMXXXXXXXXXXXXXXXXXWIIGIVEKGNRCAR-----IIDKPR 418
              +P ++A  F  E++                     WIIG V   ++        +ID P 
Sbjct: 556625 MPEDKAREFVKEIEE--------------IEHQPAWIIGRVLASDKPVTENRSVVIDNPT 556762

Query: 419    IIEV 422
              I+E+
Sbjct: 556763 ILEI 556774


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,543,923
Number of Sequences: 42
Number of extensions: 147858
Number of successful extensions: 419
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 29
length of query: 447
length of database: 10,980,844
effective HSP length: 104
effective length of query: 343
effective length of database: 10,976,476
effective search space: 3764931268
effective search space used: 3764931268
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)
