TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2_D.Rerio
         (447 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   169   3e-84

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  169 bits (428), Expect(3) = 3e-84
 Identities = 94/190 (49%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
 Frame = +2

Query: 27    ALNPEEHGLDRGFRLTAFSDMKGUGCKVPQETLLKLLQGLEPDRPPXXXXXXXXXXXXXX 86
             A +P   GL+  F LT FS +KG GCK+PQ  LL  L  + P+                 
Sbjct: 12368 AFDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPND---------------- 12499

Query: 87    ADFGLVSAAQGPRLGIGMDSCVIPLRHG-GLSLVQTTDFFYPLVEDPYMMGRIACANVLS 145
                  V   + P    GMDS V+ + HG GL LV TTDFF+P VEDPY+ G+IACANVLS
Sbjct: 12500 -----VKPNETP----GMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLS 12652

Query: 146   DLYAMGITECDNMLMLLSVSQKMNEKERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPW 205
             D+YAMG+TE D MLM+L V + M EK+RD+V   M++GF D A +  T+VTGGQTV+NPW
Sbjct: 12653 DVYAMGVTEVDTMLMILGVCRDMTEKQRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPW 12832

Query: 206   IIIGGVASVV 215
              I+GGVA  V
Sbjct: 12833 PIVGGVAMSV 12862



 Score =  106 bits (264), Expect(3) = 3e-84
 Identities = 56/127 (44%), Positives = 74/127 (58%)
 Frame = +1

Query: 296   AHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLFGLLQGTSSE 355
             AH+ATD+TGFG++ HARN AK Q  DV+F +H LPII  M  +++  GN F LL G ++E
Sbjct: 13291 AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAE 13470

Query: 356   TSGGLLICLPREQAARFCAEMKSSRMXXXXXXXXXXXXXXXXXWIIGIVEKGNRCARIID 415
             TSGGLL+CLP E A  F  E++                     WI+G V  G + A I+ 
Sbjct: 13471 TSGGLLLCLPAENAEAFIKELRE--------------LDEKPAWIVGRVIAGLKDACIVP 13608

Query: 416   KPRIIEV 422
              P I+EV
Sbjct: 13609 NPTIVEV 13629



 Score = 78.2 bits (191), Expect(3) = 3e-84
 Identities = 36/72 (50%), Positives = 49/72 (68%)
 Frame = +3

Query: 222   ILPDGAVPGDVLVLTKPLGTQVAVNAHQWLDIPEKWNKIKLVISREEVEQAYQEAMLNMA 281
             I P+ AV GDV++LTKPLGTQVAVN  QW   PE+W ++  V++  + + A+Q A  +M 
Sbjct: 12978 IRPENAVVGDVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASESMG 13157

Query: 282   TLNRTAAALMHK 293
              LN  AA +MHK
Sbjct: 13158 RLNLNAAKMMHK 13193


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,151,086
Number of Sequences: 5422
Number of extensions: 381691
Number of successful extensions: 1288
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 395
length of query: 447
length of database: 22,486,378
effective HSP length: 108
effective length of query: 339
effective length of database: 21,900,802
effective search space: 7424371878
effective search space used: 7424371878
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 100 (43.1 bits)
