TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2_D.Rerio
         (447 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668651.1| Blastocystis hominis, Singapore isolate B (sub-t...   262   2e-70

>emb|FN668651.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_20
          Length = 315468

 Score =  262 bits (670), Expect = 2e-70
 Identities = 145/316 (45%), Positives = 189/316 (59%), Gaps = 12/316 (3%)
 Frame = +3

Query: 119    VQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEKERDLVLP 178
              + TTDFFYP V+DPY+ G+IA  NVLSD+YAMG+TE D MLM+L VS  M     D V  
Sbjct: 201756 ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVDMEPDAMDYVTK 201935

Query: 179    LMMKGFR-----------DAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPN-DFILPDG 226
               +++GF            D A    T+VTGGQTV NPW +IGGVAS  C+   DFI P  
Sbjct: 201936 ELIRGFNGFPFLSSL*RVDQARVAVTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVH 202115

Query: 227    AVPGDVLVLTKPLGTQVAVNAHQWLDIPEKWNKIKLVISREEVEQAYQEAMLNMATLNRT 286
                PGDV+VLTKPLGTQ+AVN  +WL    K+N+++ V+S E+V  +Y+ AM +M+TLN  
Sbjct: 202116 GEPGDVIVLTKPLGTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLE 202295

Query: 287    AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346
               A LM K +AH  TD+TGFG+ GHA NLA +Q+  V  V+  LPII  MA +     N +
Sbjct: 202296 GARLMWKHHAHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMARVESHLNNNW 202475

Query: 347    GLLQGTSSETSGGLLICLPREQAARFCAEMKSSRMXXXXXXXXXXXXXXXXXWIIGIVEK 406
               L +G S+ETSGGL+I +  E A  +  E K                     WIIG V +
Sbjct: 202476 NLFKGRSAETSGGLMIMMRPEDAEAYIKEYKE--------------ITGHDAWIIGKVVE 202613

Query: 407    GNRCARIIDKPRIIEV 422
              G R   +++ P +IEV
Sbjct: 202614 GQRKGYVVENPTLIEV 202661


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,091,573
Number of Sequences: 54
Number of extensions: 104862
Number of successful extensions: 409
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 7
length of query: 447
length of database: 6,272,415
effective HSP length: 100
effective length of query: 347
effective length of database: 6,267,015
effective search space: 2174654205
effective search space used: 2174654205
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)
