TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    79   3e-15
gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    54   1e-07
gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    47   1e-05
gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    42   6e-04

>gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.25,
              whole genome shotgun sequence
          Length = 436284

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
 Frame = +2

Query: 21     RAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 80
              RA +++G TV+S KII +  T   AGY FVEF     A+  +  + G+ +     A R +
Sbjct: 285263 RASSSLG-TVVSAKIILDAETHGSAGYGFVEFETREGAQAAMPILQGRRVR----ALRIR 285427

Query: 81     LNYATYGKQ--PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSK 137
              +N+A  G +   D    +SLFVGDL   VDD ML++ F   + S    +V+ D  TG S+
Sbjct: 285428 INWAVQGSRRVADEDGLHSLFVGDLCKSVDDDMLHDAFAH-FSSLTSARVMWDVRTGTSR 285604

Query: 138    GYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
               +GFV F D  + +RAL +  G   LG +P+R++ A  K
Sbjct: 285605 EFGFVSFRDASDAERAL-KTMGGTMLGRRPIRVNRANKK 285718



 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
 Frame = -1

Query: 4      SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
              +++ G+L    DE+ +      +GE +  V+I+ +R TG   G  +VEFA++A+ +K + 
Sbjct: 362811 TIFCGNLSWNCDEDMLYETMKDIGE-ITDVRIVYDRDTGKHRGIGYVEFANVASVQKAID 362635

Query: 64     KINGKPLPGA--------TPAKRFKLNYATYGKQPDNSPEYS-------LFVGDLTPDVD 108
              ++ G  + G         + +K+F     T     D S   S       +FVG+++ D D
Sbjct: 362634 EMTGAEVDGRNIRIDFANSNSKKFTGGPKTNAYNNDRSSRPSGPVETDTVFVGNISFDAD 362455

Query: 109    DGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 164
              +G + E F  V    R  +++ D  TG  KGYG+V+F++E   ++A+ +  GA  +G
Sbjct: 362454 EGAIREMFGAV-GDVRDVRLITDRETGYFKGYGYVQFSEESAAQQAVEQLAGADCMG 362287


>gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.14,
              whole genome shotgun sequence
          Length = 557936

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
 Frame = -2

Query: 3      ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
              ++L++G L   + E  +   F   G  V SV + R++ T   +G+ FVEF  +   E  L
Sbjct: 275686 STLFVGSLHDDVTEALLWELFTQAGP-VSSVYMPRDKATAAHSGFGFVEFKSVLDTEYAL 275510

Query: 63     HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
                + G  L G+      +L+     K   +    +L+VG L+P+VD+  L   F      
Sbjct: 275509 KIMTGVRLYGSP----IRLSRGASEKSKADIGA-NLYVGGLSPEVDEAALGGTFSAFGAL 275345

Query: 123    CRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
               R   V  +P TG  +G+GFV F       RA+ E  G    G + +R+  A  K
Sbjct: 275344 ARPVNVARNPETGEPRGFGFVSFDSFEAADRAIAEMDGQFLCGAQ-IRVQYAFKK 275183


>gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.54,
              whole genome shotgun sequence
          Length = 279941

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = -2

Query: 84     ATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFV 142
              AT  + P+N  +Y LFVGDL P+  +  L + F K YPS    ++V D  +   K YGFV
Sbjct: 209389 ATLQEWPEN--DYRLFVGDLAPNTTNEALVKAFSK-YPSFAMSRIVKDRKSARPKVYGFV 209219

Query: 143    KFTDELEQKRALTECQGAVGLGCKPVRLS 171
               F D  +  RA  E  G   +G +P  LS
Sbjct: 209218 SFLDPNDFTRAWKEMNGKY-IGDRPCSLS 209135


>gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.36,
             whole genome shotgun sequence
          Length = 367059

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 2/142 (1%)
 Frame = -2

Query: 5     LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64
             +++GDL   + E+ + +AFA+ G  V+   ++R+  +G+  GY FV F   A  E     
Sbjct: 73454 IFVGDLVSAVTEDEVRQAFASFG-NVVGCNVVRDSESGLCRGYGFVMFETRAGQEAA--- 73287

Query: 65    INGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFF-VKVYPSC 123
                  L G  P  R +     + +  D     +LFV  +   V +  L++     V P  
Sbjct: 73286 -----LAGPAPVIRERQTRTGHSESKD-----TLFVSKIPVAVGEDELFDTLQAAVVPRI 73137

Query: 124   RGGKVVLDP-TGVSKGYGFVKF 144
                 +  D  TG S+G+ FVKF
Sbjct: 73136 VSLALKRDAVTGASRGFCFVKF 73071


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,342,794
Number of Sequences: 131
Number of extensions: 130122
Number of successful extensions: 593
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 152
length of query: 287
length of database: 9,560,209
effective HSP length: 98
effective length of query: 189
effective length of database: 9,547,371
effective search space: 1804453119
effective search space used: 1804453119
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)
