TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    47   5e-16
gb|GL376586.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    64   1e-10
gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    55   6e-08
gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    54   2e-07
gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    43   3e-04

>gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039,
               whole genome shotgun sequence
          Length = 1829366

 Score = 47.4 bits (111), Expect(3) = 5e-16
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = -3

Query: 73      ATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV 128
               A    RF++N+   G++ +   ++S+FVGDL PDV D +L   F   + S RG KV
Sbjct: 1426749 ANTLHRFRMNWGAGGRRIETGDDHSVFVGDLAPDVSDELLLTTFSTRFSSVRGAKV 1426582



 Score = 37.4 bits (85), Expect(3) = 5e-16
 Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
 Frame = -1

Query: 127     KVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA 173
               +VV+DP T +SKG+GFV+F ++ E  +AL    G V    +P+R+SVA
Sbjct: 1426517 QVVIDPVTRMSKGFGFVRFGNKEEADQALQTMNG-VYCSSRPMRVSVA 1426377



 Score = 37.0 bits (84), Expect(3) = 5e-16
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -1

Query: 33      VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 68
               VK+IR+++TG PAGY F+EF     A+  L   NG+
Sbjct: 1426955 VKLIRDKVTGYPAGYGFLEFPTQRGAQLVLETYNGQ 1426848


>gb|GL376586.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581794,
              whole genome shotgun sequence
          Length = 282497

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
 Frame = -2

Query: 3      ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
              ASL++GD+ P + E  +   F  +G  V S+++ R+ +T    GY +V F ++A AE+ L
Sbjct: 165226 ASLYVGDIHPDVTEALLFEIFNAVGP-VASIRVCRDAVTRRSLGYAYVNFHNVADAERAL 165050

Query: 63     HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
                +N   + G       ++ ++        S   ++FV +L   +D+  LY+ F  ++ +
Sbjct: 165049 DTMNFTSIKGVP----CRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTF-SLFGN 164885

Query: 123    CRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 164
                  KV +D  TG SKGYG+V +        A+ +  G +  G
Sbjct: 164884 ILSCKVAIDNTTGASKGYGYVHYETAEAAHEAIAKINGMLIAG 164756


>gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582011,
             whole genome shotgun sequence
          Length = 418791

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 1/177 (0%)
 Frame = -2

Query: 3     ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
             A++++G+L+  + E  +       G +V++V + R+++T     Y FVEF     AE  L
Sbjct: 31514 ATVYVGNLDDRVTEELLWELMLQAG-SVINVHMPRDKVTNTHQNYGFVEFRTEECAEYAL 31338

Query: 63    HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
               +N   L G    K  ++  A+  K+ +     +LF+G+L  +VD+ +LY+ F      
Sbjct: 31337 KVMNMIQLYG----KVMRVKKASQDKK-NLDIGANLFIGNLDAEVDEKLLYDTFSAFGGI 31173

Query: 123   CRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
                 K++ D  T VS+G+GF+ F D  E      EC     L  + V +  A  K S
Sbjct: 31172 IETPKIMRDAETKVSRGFGFISF-DSFEASDLAIECMNGQYLCNRQVVVQYAYKKDS 31005


>gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020,
              whole genome shotgun sequence
          Length = 790859

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -2

Query: 85     TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVK 143
              T  + P+N  ++ LF GDL  +V D +L   F + Y S +  KVV D  T  S+GYGFV 
Sbjct: 626785 TLAEWPEN--DFRLFCGDLGNEVSDELLAHSFSR-YASFQRAKVVRDKLTHKSRGYGFVS 626615

Query: 144    FTDELEQKRALTECQGAVGLGCKPVRLS 171
              FTD  +  +AL E  G   +G +PV+L+
Sbjct: 626614 FTDPFDCAKALREMNGKY-IGNRPVKLT 626534


>gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582031,
              whole genome shotgun sequence
          Length = 1316296

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 98     LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTE 156
              +FV  L P VDD  LYE F K++      KVV D  TG SKG+GFV F + +    A+  
Sbjct: 138563 VFVAGLPPHVDDNALYEKF-KMFGEMHQSKVVYDQKTGRSKGFGFVTFCEYVHALEAVDN 138739

Query: 157    CQGAV 161
                 +V
Sbjct: 138740 LNQSV 138754


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,769,380
Number of Sequences: 82
Number of extensions: 142059
Number of successful extensions: 601
Number of sequences better than 1.0e-03: 5
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 150
length of query: 287
length of database: 14,267,206
effective HSP length: 101
effective length of query: 186
effective length of database: 14,258,924
effective search space: 2652159864
effective search space used: 2652159864
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)
