TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000630.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    63   2e-10

>gb|CM000630.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 28, whole genome shotgun
              sequence
          Length = 387582

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
 Frame = -1

Query: 4      SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
              SL++GDL P ++E+ +   F+ +G  V S+++ R+ +T    GY +V F  +A AE+ + 
Sbjct: 302808 SLYVGDLAPDVNESLLFEIFSAVGP-VASIRVCRDAVTRRSLGYSYVNFHQMADAERAMD 302632

Query: 64     KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
               +N   + G    K  ++ ++        S   ++FV +L   +D+  LY+ F  ++ + 
Sbjct: 302631 TMNFSMIKG----KPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTF-SLFGNI 302467

Query: 124    RGGKVVLDPTG-VSKGYGFVKFTDELEQKRALTECQG 159
                 KVV D  G VS GYG+V +        A+ +  G
Sbjct: 302466 LSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDG 302356



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = -1

Query: 84     ATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFV 142
              +T    P  +P  SL+VGDL PDV++ +L+E F  V P     +V  D  T  S GY +V
Sbjct: 302841 STASDNPFQTP--SLYVGDLAPDVNESLLFEIFSAVGP-VASIRVCRDAVTRRSLGYSYV 302671

Query: 143    KFTDELEQKRALTECQGAVGLGCKPVRL 170
               F    + +RA+     ++  G KP R+
Sbjct: 302670 NFHQMADAERAMDTMNFSMIKG-KPCRI 302590


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,868,435
Number of Sequences: 31
Number of extensions: 89186
Number of successful extensions: 366
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 95
length of query: 287
length of database: 7,911,228
effective HSP length: 97
effective length of query: 190
effective length of database: 7,908,221
effective search space: 1502561990
effective search space used: 1502561990
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)
