TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    70   5e-13
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    44   3e-05

>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 70.1 bits (170), Expect = 5e-13
 Identities = 50/179 (27%), Positives = 90/179 (50%)
 Frame = +2

Query: 1      MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 60
              ++ASL++GDL+  + E  +   F ++   V SV+I R+ LT    GY +V +  +A AE+
Sbjct: 692153 VSASLYVGDLDADVTETMLYEIFNSVA-VVSSVRICRDALTRRSLGYAYVNYNSVADAER 692329

Query: 61     CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
               L  +N   + G    +  ++ +         + + ++FV +L   +D+  L++ F  ++
Sbjct: 692330 ALDTLNFTCIRG----RPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTF-SLF 692494

Query: 121    PSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
               +    K+  D  G S GYGF+ F      K A++   GAV LG +P+ +     KA R
Sbjct: 692495 GNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAV-LGDRPIYVGKFQKKAER 692668


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = -3

Query: 85     TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVK 143
              T  + P+N  ++ LF GDL  DV + +L   F K Y S    KV+ +  TG S+GYGFV 
Sbjct: 268016 TLDEWPEN--DFRLFCGDLGNDVTEEILANAFKK-YASFEKCKVIRNKHTGKSRGYGFVS 267846

Query: 144    FTDELEQKRALTECQGAVGLGCKPVRL 170
              FT+  +   A+ E      +G +P+ L
Sbjct: 267845 FTNPNDMLNAMKEMNRKY-VGSRPITL 267768


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,954,133
Number of Sequences: 8
Number of extensions: 21240
Number of successful extensions: 82
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 50
length of query: 287
length of database: 3,034,108
effective HSP length: 91
effective length of query: 196
effective length of database: 3,033,380
effective search space: 594542480
effective search space used: 594542480
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)
