TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno...    70   7e-13
gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 geno...    63   7e-11
gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno...    51   3e-07

>gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole
             genome shotgun sequence
          Length = 367275

 Score = 69.7 bits (169), Expect = 7e-13
 Identities = 49/179 (27%), Positives = 88/179 (49%)
 Frame = +2

Query: 1     MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 60
             ++ASL++GDL+P + E  +   F ++   V SV+I R+ LT    GY +V +  +A AE+
Sbjct: 31121 VSASLYVGDLDPDVTETMLYEIFNSVA-VVSSVRICRDALTRRSLGYAYVNYNSVADAER 31297

Query: 61    CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
              L  +N         ++  ++ +         + E ++FV +L   +D+  L++ F  ++
Sbjct: 31298 ALDTLNFT----CIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTF-SLF 31462

Query: 121   PSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
              +    K+  D  G S GYGF+ F      K A+    G + LG +P+ +     KA R
Sbjct: 31463 GNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMI-LGDRPIYVGKFQRKAER 31636


>gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 genomic scaffold, whole
              genome shotgun sequence
          Length = 236830

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
 Frame = -2

Query: 3      ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
              A+L+ G+L+  +DE  ++  FA  G  + SV I R+++TG  +G+ F+EF  +   E   
Sbjct: 114309 ATLYCGNLDNRVDEELLAELFAQTGP-IKSVYIPRDKVTGTHSGFGFIEFQQVLDCEYAQ 114133

Query: 63     HKINGKPLPGATPAKRFKLNYATYG-KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
                +N   L G    K  + + A+   KQ D     +LFVG+L+PD+D+ +L++ F  ++ 
Sbjct: 114132 RILNSVKLYG----KPIRCSKASQDRKQLDIGA--NLFVGNLSPDIDEKLLHDIF-SLFG 113974

Query: 122    SCRGGKVVLDPTGV-SKGYGFVKFTDELEQKRALTECQG 159
              +    KV+        +GYGFV +        A+    G
Sbjct: 113973 NVISTKVIFKENNEDERGYGFVSYDSFNSSDNAIATLNG 113857


>gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole
              genome shotgun sequence
          Length = 528544

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
 Frame = -2

Query: 85     TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVK 143
              T  + P+N  +Y LF GDL  D+ + +L   F ++YPS +  KV+ D  T  S+GYGF+ 
Sbjct: 120717 TLNEWPEN--DYRLFCGDLGNDITEEVLANNF-QIYPSFQKCKVIRDKYTNKSRGYGFIS 120547

Query: 144    FTDELEQKRALTECQGAVGLGCKPVRL 170
              F D  +  RAL E      +G +P+ L
Sbjct: 120546 FGDPQDMLRALKEMNRKY-IGSRPITL 120469


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,924,055
Number of Sequences: 84
Number of extensions: 20585
Number of successful extensions: 106
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 69
length of query: 287
length of database: 3,081,750
effective HSP length: 91
effective length of query: 196
effective length of database: 3,074,106
effective search space: 602524776
effective search space used: 602524776
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)
