TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp...    62   2e-10
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...    45   2e-05
dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl...    40   8e-04

>dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete
              sequence
          Length = 839707

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 44/163 (26%), Positives = 80/163 (49%)
 Frame = +2

Query: 4      SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
              SL++GDL+P + E  +   F+++G  V+SV++ R+ +T    GY +V F +   AE+ + 
Sbjct: 757205 SLYVGDLQPDVVEQNLFELFSSVG-PVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAID 757381

Query: 64     KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
               +     P  T  K  ++ +         +PE ++F+ +L   +D+  LY+ F   +   
Sbjct: 757382 VLQFYEGP-LTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTF-STFGKV 757555

Query: 124    RGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCK 166
                 K+  D  G S GY FV + D    K  +++  G +  G K
Sbjct: 757556 LSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQK 757684



 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
 Frame = +2

Query: 44     PAGYCFVEFADLATAEKCLHKINGKPLPGAT--------PAKRFKLNYATYGKQPDNS-- 93
              P G+ FV F     A   +  +NG  L G T         A+R  +  A   +  ++   
Sbjct: 758078 PRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQ 758257

Query: 94     --PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQK 151
                 + +LFV +L+ DVD+  L E F + + +    +++ D  GVSKG+GFV F+   E  
Sbjct: 758258 KLQDVNLFVKNLSDDVDENRLREEFSR-FGTITSLRIMRDEKGVSKGFGFVAFSHPDEAI 758434

Query: 152    RALTECQGAVGLGCKPVRLSVAIPKASRVKPVE 184
              +A+TE    + +G KP+ +++A  K  R   +E
Sbjct: 758435 KAVTEMNQRI-VGQKPIYVALAQRKDQRRAQIE 758530



 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
 Frame = +2

Query: 52     FADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGM 111
              F D + A   L+ ++  P  GAT         A         P  SL+VGDL PDV +  
Sbjct: 757088 FGDGSVAGFALNGMSSLPASGATAVP------AASASGTGELPNVSLYVGDLQPDVVEQN 757249

Query: 112    LYEFFVKVYP--SCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVG--LGCKP 167
              L+E F  V P  S R  + V+  T  S GY +V F +  + +RA+   Q   G     KP
Sbjct: 757250 LFELFSSVGPVVSVRVCRDVV--TRRSLGYAYVNFQNPEDAERAIDVLQFYEGPLTKNKP 757423

Query: 168    VRL 170
              +R+
Sbjct: 757424 IRI 757432


>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
              sequence
          Length = 1253087

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
 Frame = -3

Query: 5      LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL-- 62
              +++G L    +E  +   F   G+ + +V ++RNR TG P G+ FV F +   A+     
Sbjct: 958884 VFVGGLSWDTNEASLVAYFERFGKVIDAV-VMRNRETGQPRGFGFVTFEEEGVAQAVASL 958708

Query: 63     --HKINGK--------PLPGATPAKRFKLNYAT-YGKQP-DNSPEYSLFVGDLTPDVDDG 110
                H+++G+        P     P     ++ A  YG       P   ++V  L     + 
Sbjct: 958707 ERHELDGRLVETKVAVPKSAEDPESNTVVDTAQRYGPSGLGEKPSRRVYVSGLPQACTED 958528

Query: 111    MLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTD 146
               L  FF + + S    +VV+D  TG+SKGYGFV F +
Sbjct: 958527 DLRAFFSR-FGSLEAVRVVVDHHTGLSKGYGFVVFAE 958420


>dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete
              sequence
          Length = 739753

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -1

Query: 30     VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING 67
              V+ + + R++ TG P G+ F  FA+ + AE+C+ K+NG
Sbjct: 402889 VVRIYLARDKYTGAPKGFAFAAFAERSAAERCIAKLNG 402776


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,927,785
Number of Sequences: 20
Number of extensions: 65753
Number of successful extensions: 334
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 83
length of query: 287
length of database: 5,515,582
effective HSP length: 95
effective length of query: 192
effective length of database: 5,513,682
effective search space: 1058626944
effective search space used: 1058626944
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 92 (40.0 bits)
