TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1 . Mus musculus
         (287 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668641.1| Blastocystis hominis, Singapore isolate B (sub-t...    49   1e-09
emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-t...    47   1e-05

>emb|FN668641.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_11
          Length = 591523

 Score = 49.3 bits (116), Expect(2) = 1e-09
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
 Frame = -1

Query: 23     FATMGETVMSVKIIRNRLTGIPAGYCFVE-------FADLATAEKCLHKING---KPLPG 72
              +A   E + S+K++R+R T    G  F         F D AT E  +H +NG   +P+  
Sbjct: 355501 YAKESEGLSSIKLMRDRTTNESLGLHFSTCLRLGFGFIDFATEEDAIHALNGYNGRPIRF 355322

Query: 73     --------ATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124
                      A     F+LN+    +  +    Y L++GDL   V D  LY  F   Y S  
Sbjct: 355321 LVWFL*LLAGTGYTFRLNFGGNSRNLNLGDNYCLYIGDLESSVTDTQLYTIFRDKYLSFC 355142

Query: 125    GGKVVLD 131
              G KV+ +
Sbjct: 355141 GAKVLFN 355121



 Score = 30.4 bits (67), Expect(2) = 1e-09
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 133    TGVSKGYGFVKFTDELEQKRALTECQG 159
              T VSKGYGF++F    E + AL E  G
Sbjct: 355082 TSVSKGYGFIQFRARDEAETALKEMNG 355002


>emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_0
          Length = 1966360

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = -3

Query: 92     NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGV-SKGYGFVKFTDELEQ 150
              N  ++ LFVG+L  +V   +L   F   YPS   G+VV       S GYGFV F++ LE 
Sbjct: 688652 NEKDFRLFVGNLGREVTTEILSNLFRMKYPSFTMGRVVESKVHKGSAGYGFVAFSNALEG 688473

Query: 151    KRALTECQGAVGLGCKPVRL 170
               +A+ E  G +  G +P+++
Sbjct: 688472 VKAMKEMNGKL-CGSRPMKI 688416


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,821,551
Number of Sequences: 54
Number of extensions: 56315
Number of successful extensions: 233
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 114
length of query: 287
length of database: 6,272,415
effective HSP length: 96
effective length of query: 191
effective length of database: 6,267,231
effective search space: 1197041121
effective search space used: 1197041121
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 93 (40.4 bits)
