TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sbp2_H.sapiens
         (854 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic s...   110   6e-24

>gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig13,
              whole genome shotgun sequence
          Length = 836226

 Score =  110 bits (274), Expect = 6e-24
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 12/296 (4%)
 Frame = -3

Query: 499    SQMKTPHNPLDSSAPLMKKGKQ----REIPKAKKPTSLKKIILKERQERKQRLQENAVGP 554
              S + + H    S+   + K K+    R   K KK +SLK+ IL  +Q ++  +Q+  +  
Sbjct: 279313 STLSSVHPSSTSTTSTLTKKKKTIP*RHTKKRKKISSLKRNILLYKQLKQNYVQQQQLKQ 279134

Query: 555    AFTSDDTQDGESGGD-DQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASH 613
                  +  +D ++    D+   + E          I   S+  K EE   T     T  + 
Sbjct: 279133 QQQLEQIKDQQNIDSLDKVETERE----------IEESSLNAKEEETTTTTTTTTTTTTS 278984

Query: 614    LAPNHTTFP-------KIHSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVK 666
                   +T P       ++     ++Y +Q+ +KE+D    + + ++ +FQD    K+P  
Sbjct: 278983 SNNTTSTTPNNVGVNSEVAVAVVQEYMNQVCTKEIDDTAREFIVKIKQFQDNYALKNP-- 278810

Query: 667    AKTKRRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFV 726
               K K+R + GLRE+           VII+PN E I   GGL++++ +II     + + + 
Sbjct: 278809 DKPKKRFITGLREIERAADCGKLSAVIIAPNIEDINCPGGLNESIKSIIRLCRSKQLLYT 278630

Query: 727    FALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLENVQQ 782
              FAL+R+ +GR +N  + VS  GI  +DGA+D ++++ +LT+A+R  ++   + VQQ
Sbjct: 278629 FALSRRIIGRLINVHIKVSAFGILFHDGAEDIYNRLSKLTLASRDTFRKQQQQVQQ 278462


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,685,956
Number of Sequences: 42
Number of extensions: 272885
Number of successful extensions: 1305
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 439
length of query: 854
length of database: 10,980,844
effective HSP length: 109
effective length of query: 745
effective length of database: 10,976,266
effective search space: 8177318170
effective search space used: 8177318170
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 100 (43.1 bits)
