TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sbp2_R.norvegicus
         (846 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    68   8e-12

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 36/108 (33%), Positives = 62/108 (57%)
 Frame = -3

Query: 664    RRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALN 723
              R   +G+RE ++ L+ +KLK +I++P+ E    +G L   +  I+  A E NIP +FALN
Sbjct: 826356 RVFTVGVREAMRCLRHKKLKALIVAPDIEGDGVEGSLRHHVIHILLQAQELNIPTIFALN 826177

Query: 724    RKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVELTMAARQAYKTMLE 771
              R  +GR++ K + +S++G+ S  G + QF  +       R+ Y   +E
Sbjct: 826176 RHRIGRAMGKHMRMSVLGLLSIRGVEKQFQAISHTAQLLRKLYHFCIE 826033



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 95/487 (19%), Positives = 176/487 (36%), Gaps = 30/487 (6%)
 Frame = -1

Query: 147     SSDERRAWEEQKSSNRRADGAVPCEARPARGSCHLKSDGYHKRPDRKSRILTKSASTSKP 206
               SS    +  E + S +     +P  A+ A       SD      D + +  TK+A+  K 
Sbjct: 1031444 SSSGSSSSSEDEKSKKNTKAVIPTPAKKAMSDSSSSSDSSSSSEDEQPKKNTKAAAPVKK 1031265

Query: 207     EFEFSRLDFPELQSPKNSNLPETQKQPRWGPLGPAASNMSLLGEAGKPVADMVEG----- 261
                   S     +  S      P+   +    P+  + SN S    +    +   +      
Sbjct: 1031264 NISNSSSSSSDSDSSSEDEQPKKNAKAA-APMKKSISNSSSSSSSSDSDSSSEDEQPKKN 1031088

Query: 262     --------KMVKTDHTDGAVTNNAATS----SPSCTRELSWTPMGYIVRQTVSS-DSAAA 308
                       K +    +D + ++++++S    S   T+ +  TP    +  + SS DS+++
Sbjct: 1031087 AKAATPMKKNISNSSSDSSSSSDSSSSEDEKSKKNTKAVIPTPAKKAMSDSSSSSDSSSS 1030908

Query: 309     TETVNSIINLKKTTSSADAKNVSVTSEALSSDPSFSREKRVHPGPKAKASQGSELEQXXX 368
               +E      N+K TT ++  K VS +S + S   S S +++     KA AS          
Sbjct: 1030907 SEDEQPKKNIKVTTQASAKKAVSDSSSSSSDSSSSSEDEQPKKNTKAAAS---------- 1030758

Query: 369     XXXXXXXXXXXXXXYEVLPVQEPPRIEDAEEFPNLSVASERRHRGESPKLQSKQQAQNDF 428
                                +P ++   + D+    + S +SE     E PK  SK  A    
Sbjct: 1030757 -----------------IPAKK--AMSDSSSSSDSSSSSE----DEQPKKNSKAAASTPA 1030647

Query: 429     KTG-GKKSQVPVQLDLGGMLAALEKQQHAPHAKPSSRPVVFSVGAVPVLSKDASS-GERG 486
               K      S      D        + ++++  A P  + +  S  +      D+SS  E+ 
Sbjct: 1030646 KKAMSDSSSSSSSSDSSSSSEDEQPKKNSKAATPMKKNISNSSSSSSSSDSDSSSEDEQP 1030467

Query: 487     RRSSQVKTP------HNPLDSSAPLMKKGKQREIP----KAKKPTSLKKIILKXXXXXXX 536
               +++++  TP      ++  DSS+       + E P    KA   T+ KK           
Sbjct: 1030466 KKNAKAATPMKKNISNSSSDSSSSSDSSSSEDEKPKKNTKAAASTTAKK----------- 1030320

Query: 537     XXXXXSAVSPTVASDDSQDVESGVTNQIPSPDNPTGPEKTEEPMSSTPVVEGESEEPAGT 596
                     A+S + +SD S   +S   N+       +   K+    S + V   +S+  A +
Sbjct: 1030319 ------AMSDSSSSDSSSSSDSESDNE--KAKKVSKSVKSSNSSSESEVEMNKSKRKAES 1030164

Query: 597     EFQRDPE 603
               E   + E
Sbjct: 1030163 ELNNNKE 1030143


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.311    0.126    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,027,898
Number of Sequences: 8
Number of extensions: 71554
Number of successful extensions: 251
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 100
length of query: 846
length of database: 3,034,108
effective HSP length: 100
effective length of query: 746
effective length of database: 3,033,308
effective search space: 2262847768
effective search space used: 2262847768
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 95 (41.2 bits)
