TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sbp2_H.sapiens
         (854 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.14 of Capsaspora owczarzaki ATCC 30864                   77   2e-26

>supercontig_1.14 of Capsaspora owczarzaki ATCC 30864
          Length = 919646

 Score = 76.6 bits (187), Expect(2) = 2e-26
 Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
 Frame = +1

Query: 705   GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVE 764
             GGLDD + +I+  A  Q+ P VFALNR+ + R+LN  VPVS VGIF++DG   ++  M+ 
Sbjct: 88435 GGLDDAISSILTEAHAQDRPVVFALNRRKIARALNIHVPVSAVGIFTFDGLHQEYKSMLL 88614

Query: 765   LTVAARQAYKTMLENVQQELVGEPRP------QAPPSLPTQGPSCPAEDGPPALKEKEEP 818
              +   R AY  MLE    + V  P P       AP    T   S   +  P  L E   P
Sbjct: 88615 QSTEGRLAYFAMLEATHAQWVETPPPTALADSSAPSGSTTPSSSNSVDHAPVPLTEPIAP 88794



 Score = 62.4 bits (150), Expect(2) = 2e-26
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
 Frame = +2

Query: 599   EPPGTELQRDTEASHLAPNHTTFPKIHSRRFRD---YCSQMLSKEVDACVTDLLKELVRF 655
             E P +E+ R    SH          +HS        YCSQ +  E+D+    +LK+L +F
Sbjct: 88025 EAPFSEVSRVKRCSHCLVRVVFAHSVHSHSLPQSHRYCSQKVGAELDSATAIVLKQLHKF 88204

Query: 656   QDRMYQK-DPVKAKTKRRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKG 705
             Q+R     DP KAK +R  V+GL+EV          C+I++P+ E ++S G
Sbjct: 88205 QERRLATIDPNKAKQRRWFVVGLKEVFKHLQRGKLRCLIVAPDIESVRSAG 88357


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,384,515
Number of Sequences: 89
Number of extensions: 364992
Number of successful extensions: 2575
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1935
Number of HSP's gapped (non-prelim): 1262
length of query: 854
length of database: 9,347,932
effective HSP length: 108
effective length of query: 746
effective length of database: 9,338,320
effective search space: 6966386720
effective search space used: 6966386720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 99 (42.7 bits)
