TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sbp2_M.musculus
         (858 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 geno...    69   6e-12

>gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 genomic scaffold, whole
             genome shotgun sequence
          Length = 567910

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 35/108 (32%), Positives = 63/108 (58%)
 Frame = -2

Query: 676   RRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALN 735
             R   +G+RE ++ L+ +KL+ +I++P+ E    +GGL   +  I+  A E NIP +FALN
Sbjct: 47313 RVFTVGVREAMRCLRHKKLQALIVAPDIEGGDIEGGLRHHVIHILMQAQEFNIPVIFALN 47134

Query: 736   RKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVELTMAARQAYKTMLE 783
             R  +GR++ K + +S++G+ S  G + QF  +       ++ Y   +E
Sbjct: 47133 RHRIGRAMGKHMRMSVLGLLSTRGVERQFQTVAHTAKVLQRLYNFCIE 46990


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.311    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,631,363
Number of Sequences: 84
Number of extensions: 61580
Number of successful extensions: 172
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 99
length of query: 858
length of database: 3,081,750
effective HSP length: 100
effective length of query: 758
effective length of database: 3,073,350
effective search space: 2329599300
effective search space used: 2329599300
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 95 (41.2 bits)
