TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sbp2_M.musculus
         (858 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    47   3e-05

>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 10/200 (5%)
 Frame = +2

Query: 591    SVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFPKIHSRRFRDYCSQMLSKEVDA-- 648
              S S +P  +     PA +E    P          T+P+   RRF        S+ +    
Sbjct: 111434 SHSQSPEKDLSLPFPARSEEASAPLCSARGSPGTTYPE---RRFPGLLPTENSQSLGTVT 111604

Query: 649    CVTGLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQS 708
               V  LL++L++FQ R+ +    K +  +R V G+RE  + L+ ++   +I+  N     +
Sbjct: 111605 AVKQLLRKLIKFQARLARDQSRKLRAHKRYVCGIRECTRLLRAKQCLLLIVPSNGILPCA 111784

Query: 709    KGGLDDTLHTIIDCACEQNIPFVFALNRKALGRSLNK-------AVPVSIVGIFSYDGAQ 761
                 L +TL      A E ++P +  ++   L R L +       A P   VG+ S +GA 
Sbjct: 111785 AANLQETL----ALAEEHSVPIIRDISATELCRLLRRVQASRLNARPACCVGVKSCEGAS 111952

Query: 762    DQFHKMVE-LTMAARQAYKT 780
               +  ++ + L + A   Y T
Sbjct: 111953 LEMQRVFDALALQAGNIYPT 112012


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.311    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,620,230
Number of Sequences: 20
Number of extensions: 274581
Number of successful extensions: 1554
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 233
length of query: 858
length of database: 5,515,582
effective HSP length: 104
effective length of query: 754
effective length of database: 5,513,502
effective search space: 4157180508
effective search space used: 4157180508
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 97 (42.0 bits)
