TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pstk.mus
         (359 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743912.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    59   7e-09

>gb|GG743912.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.30, whole
              genome shotgun sequence
          Length = 383214

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 57/212 (26%), Positives = 85/212 (40%)
 Frame = -2

Query: 20     LCVLCGLPAAGKSTFXXXXXXXXXXERGWAVGVLSYDDVLPLALPDCDGTQPRPSQWKMF 79
              L +LCGLP AGKSTF           R + V  +S+DDV        DG    P QWK  
Sbjct: 270758 LLLLCGLPGAGKSTFARAIADAA--SRTYEVRCISFDDVFAAHFA-ADGGSFAPQQWKAA 270588

Query: 80     RQELLKHLECFLVAVISGAQMSAPPNRTEAVWEDFITCLKSQDLMIFPTALEAQPCHLLA 139
                 +   +E  L A  +  +          +    ++      L +  TAL  Q  H+L 
Sbjct: 270587 VAAIYTEVESALAAASTSGKTH--------M*AILVSLRCRYQLQLL*TALG*Q--HVLP 270438

Query: 140    KPAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLKRNGERSQPLP 199
              + A  + L L      +      E   L    + GF  + +D   + C  RN  R  P+P
Sbjct: 270437 QHA-QKVLQLCRQRTTHRADKDGESVVLG---NAGFGVIHVDTKPDLCRARNAARQSPVP 270270

Query: 200    DETIQLMGRKIEKPNPEKNAWEHNSLIIQSSA 231
              D   + M    E P+P  + WE  S+++  S+
Sbjct: 270269 DVVFRRMHALFEPPSPSMHPWEARSIVVDLSS 270174


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,598,745
Number of Sequences: 1445
Number of extensions: 381395
Number of successful extensions: 1719
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 706
length of query: 359
length of database: 17,710,878
effective HSP length: 105
effective length of query: 254
effective length of database: 17,559,153
effective search space: 4460024862
effective search space used: 4460024862
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)
