TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pstk.human
         (348 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    49   1e-05
gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    48   2e-05

>gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028,
              whole genome shotgun sequence
          Length = 960197

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 52/187 (27%), Positives = 72/187 (38%), Gaps = 13/187 (6%)
 Frame = -2

Query: 20     LCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLL 79
              L V CGLP AGKS  A AL              VAY                       L
Sbjct: 473491 LVVFCGLPGAGKSFVATAL--------------VAY-----------------------L 473423

Query: 80     RQELLKYLEYFLMAVI--------NGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEA 131
              R  + + +EY   A +        NG Q    P      W+  I  L    L+  A   A
Sbjct: 473422 RAHVQQDVEYITEASVHVDRRSGYNGAQCGSYP-----AWQGLILILS---LVIHADSRA 473267

Query: 132    Q-----SCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETC 186
              +     +     + AV+    +VLD   Y + +RYE++  AR  S  +C +++D PL   
Sbjct: 473266 EKTTRSALKAAAEKAVNASTIVVLDALNYIKGVRYELFCKARAESTTYCVVYVDTPLALA 473087

Query: 187    LQRNGQR 193
              L+RN QR
Sbjct: 473086 LERNAQR 473066


>gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582036,
              whole genome shotgun sequence
          Length = 1090657

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 61/280 (21%), Positives = 100/280 (35%), Gaps = 38/280 (13%)
 Frame = +2

Query: 20     LCVLCGLPAAGKSTFARALAHRLQQE---------QGWAIGVVAYDDVMPDAFLAGARAR 70
              L  LCGLP AGK+T    LA               + W    +++DD++     + ++  
Sbjct: 569993 LIALCGLPGAGKTTLVSRLACNTSHSAAATGDRPMRRWWCERLSFDDLLASYSSSTSQTD 570172

Query: 71     PAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFE 130
                P+ WK  ++E++  ++ +  A       +V P  + ++ E+                 
Sbjct: 570173 FDPALWKHCQREMVARVKVWRKAREGATATTVTPAGSVSVSEE----------------- 570301

Query: 131    AQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLA----------------------- 167
                           R L L++DDNF Y+S R    QLA                       
Sbjct: 570302 ------------ERILVLLVDDNFQYRSQRKRFCQLACEGEQSVACTTCASSFTTCAYTV 570445

Query: 168    ---RKYSLGFCQLFLDCPLETCLQRNGQRP--QALPPETIHLMGRKLEKPNPEKNAWEHN 222
                      GF  L +D P+  C QRN  R     +P      M    E P+ +++A E  
Sbjct: 570446 VLLHVVDCGFGILHVDTPVALCRQRNAARDGVARVPDAVFERMVSVFEAPDGDQHACERP 570625

Query: 223    -SLTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQK 261
                  IP P   +E      D       + V++A D + Q+
Sbjct: 570626 VKAIIPGPFLDAEMDAAGGD-------DAVEHAMDELVQQ 570724


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,809,573
Number of Sequences: 82
Number of extensions: 372104
Number of successful extensions: 2374
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2226
Number of HSP's gapped (non-prelim): 556
length of query: 348
length of database: 14,267,206
effective HSP length: 103
effective length of query: 245
effective length of database: 14,258,760
effective search space: 3493396200
effective search space used: 3493396200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 97 (42.0 bits)
