TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pstk.xenopus
         (382 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    58   8e-09

>gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 30, whole genome shotgun
              sequence
          Length = 317207

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 67/295 (22%), Positives = 115/295 (38%), Gaps = 14/295 (4%)
 Frame = -3

Query: 10     VGICLLCGLPGAGKSTLGRSFSATILRQRFAVITYDKIITAEAFHLALQDELDQSREIPP 69
              V + L+CGLPG GKSTL RS  ++      + I  D +      + ALQ+ L +   + P
Sbjct: 118242 VVVLLVCGLPGCGKSTLARSLCSSCTDDPHSPIHVDYVE-----YDALQETLARRDNLTP 118078

Query: 70     SSALLKTQETSQWKQHRQYLLEYLEHLIVALLNSSELRPPEGKCDGTWYRFVDCLEEQGL 129
                A         W++ R   LE++   +   + +  +                       
Sbjct: 118077 LEA---------WRRTRTVALEHVRSFLTHAVTTGPI----------------------- 117994

Query: 130    ISSAGSSTEKGTHSVIIPENDEVCLVLDDNFYYQSMRYEVYQLARKY-----SLGFCQIY 184
              +++         H           L+LDDNF+ + MR +VY++ R +     ++ F   +
Sbjct: 117993 VTNTQPQQPAQPH----------VLLLDDNFHLRGMRQQVYRVCRSFVTPTVAVAFGIAW 117844

Query: 185    LHCPVESCVLRNKGR--PVSIAEDTIRLMDKKIQKPNPEKNSWEQNSLVLDSSQLIKADD 242
              L  P +  + RN GR  P  +   T   +    + P+P + SWE +  V         D 
Sbjct: 117843 LAVPSDRALSRNAGRDPPRRVTTVTWDRLAAAAEPPDPTR-SWETHVRVFRLGDHTTDDP 117667

Query: 243    H---RIVKLVNQAMANPLRPLQENL----EIKEKDRAITAASILHQADQSIRRCI 290
              H   R V ++   +A+      E +     + E D     A+  H  DQ +RR +
Sbjct: 117666 HASTRHVSVLRDWIASAAPRNDETVPWLPPVVETDAVPVPANEAHVRDQQLRRLV 117502


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,021,017
Number of Sequences: 31
Number of extensions: 166992
Number of successful extensions: 901
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 76
length of query: 382
length of database: 7,911,228
effective HSP length: 100
effective length of query: 282
effective length of database: 7,908,128
effective search space: 2230092096
effective search space used: 2230092096
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)
