TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pstk.xenopus
         (382 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s...    49   2e-10

>gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3,
              whole genome shotgun sequence
          Length = 2290287

 Score = 49.3 bits (116), Expect(2) = 2e-10
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
 Frame = +2

Query: 9      QVGICLLCGLPGAGKSTLGRSFSATILR-----------QRFAV--ITYDKIITAEAFHL 55
              Q  I L  GLP +GK+ L    +  I++           + F +  I YDKI     +HL
Sbjct: 850316 QNNIVLFNGLPASGKTYLCTQLTYYIVKLLESTSNNDDNKSFLIYHIEYDKI-----YHL 850480

Query: 56     ALQDELDQSREIPPSSALLKTQE------TSQWKQHRQYLLEYLEHLIVALLNSSELR-- 107
               +QD +  +R +  ++      +      TS WK  RQ +    ++ I +LLN++ L+  
Sbjct: 850481 -IQDSIKNNRNLQTTTTATMVAKDNINLTTSSWKIVRQEI----QYQIESLLNNNSLKSF 850645

Query: 108    ---PPEGKCDGTWYRFVDCLEEQGLISSAGSSTEKGTHSVIIPENDEVCLVLDDNFYYQS 164
                 PP        YRF D        +   ++  K  +  I        ++LDDNFYY+S
Sbjct: 850646 LLLPPIEPI----YRFHDNSN-----NDHNNNNNKNNNKTIYK-----IILLDDNFYYKS 850783

Query: 165    MRYEVYQLARKYSL 178
              MRY  Y++A++  L
Sbjct: 850784 MRYIYYKIAKQCKL 850825



 Score = 33.9 bits (76), Expect(2) = 2e-10
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
 Frame = +3

Query: 175    KYSLGFCQIYLHCPVESCVLRNKGR-------------PVSIAEDTIRLMDKKIQKPNPE 221
              K + GF Q++L+  +    L NK R              + + +D I  M++  + PNP+
Sbjct: 850905 KDNTGFTQLFLYKDLYLSKLNNKLRLQQLLNCQTKPFEQLIVTDDVIDKMNQIFEDPNPQ 851084

Query: 222    KNSWEQNSLVL 232
               + WE N++V+
Sbjct: 851085 SHKWELNTVVI 851117


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,358,955
Number of Sequences: 42
Number of extensions: 189030
Number of successful extensions: 882
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 70
length of query: 382
length of database: 10,980,844
effective HSP length: 102
effective length of query: 280
effective length of database: 10,976,560
effective search space: 3073436800
effective search space used: 3073436800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)
