TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|147898771|ref|NP_001085619.1| eukaryotic elongation factor,
selenocysteine-tRNA-specific [Xenopus laevis]
         (575 letters)

Database: N.gruberi/genome.fa 
           784 sequences; 40,964,085 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...   283   1e-96
gb|GG738850.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...   126   7e-29
gb|GG738849.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    76   8e-14
gb|GG738913.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    72   1e-12
gb|GG738846.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    72   1e-12
gb|GG738869.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    72   1e-12
gb|GG738906.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    60   8e-09
gb|GG738872.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    59   2e-08
gb|GG738860.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    49   2e-05
gb|GG738863.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    47   5e-05

>gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_11, whole genome
             shotgun sequence
          Length = 613270

 Score =  283 bits (725), Expect(3) = 1e-96
 Identities = 146/304 (48%), Positives = 206/304 (67%), Gaps = 17/304 (5%)
 Frame = -1

Query: 38    FDKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQI 97
             FDK+PQSKERGIT DLGFS+F    P     + Y R+Q+TLVDCPGHASLIRTIIGGAQI
Sbjct: 66814 FDKSPQSKERGITQDLGFSAFYSDSPL----SEYDRIQYTLVDCPGHASLIRTIIGGAQI 66647

Query: 98    IDLMMLVIDVTKGMQTQSAECLVIGQIACNKMVVVLNKIDLLAENKRQAAIDKMTK---- 153
             ID M+LVID  KG+QTQ+AEC+VIG+I+CN ++V LNK+D++  ++R+  +DK++     
Sbjct: 66646 IDFMVLVIDAVKGVQTQTAECIVIGEISCNNLIVALNKVDMIPADQREDRVDKVSNFKIY 66467

Query: 154   -------KMQKTL-----ESTKFHGSPIVSVAAKPGGPEAPESVTG-LGISDLIELLKSH 200
                    +++K+L       TKF   PIVSV A P   E  ES+T   G+ +LI   + H
Sbjct: 66466 LGN*FSLQIKKSLIKNVFSQTKFKNPPIVSVCADPR--EESESITKEQGLKNLIAEFQKH 66293

Query: 201   TYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEIPALKVTKKVKSMQM 260
               + ++D + PFL  VDHCF+IKG+GT++TGT+L GS+S+   ++IP++   KKVKS+QM
Sbjct: 66292 VKISEKDENEPFLYMVDHCFTIKGKGTIITGTVLQGSVSIGKTIQIPSIGEEKKVKSIQM 66113

Query: 261   FHKPVSRAMQGDRLGICVTQFDPKLLERGLVCTPESLHTIHAAVISVDKIPYFKGSLQTK 320
             F  PV +A++GDR+GI VT+ D K LERG  C    +  +   + +  +I +FK  ++  
Sbjct: 66112 FKTPVDKAIKGDRIGIAVTKLDSKKLERGFACDKGYIEIVDTILANASRIRFFKKEIKNS 65933

Query: 321   AKFH 324
             AK+H
Sbjct: 65932 AKYH 65921



 Score = 71.2 bits (173), Expect(3) = 1e-96
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
 Frame = -3

Query: 418   TDIHSNTCRLAFHGVLLEGVEDKNYSESFLPN-LRVFKLKHKQGQVERVNDDYSIIGRSL 476
             T I +N CRLAF+G +++     N S+  L N L VFK K K+  V+RV D  +IIG++L
Sbjct: 65621 TQIDANMCRLAFNGKVIKMWNKSNVSKEQLVNSLPVFKYKEKKAVVDRVVDANTIIGKNL 65442

Query: 477   FKKET-NIQLFVGLKVKLSTGE----DGLIEGSFGQSGKFKI 513
                +T ++Q F+G K+ +   +     G+I+  FGQSGKFK+
Sbjct: 65441 LTSKTQSLQFFIGKKIDILIDDQPRFSGIIDSPFGQSGKFKV 65316



 Score = 40.4 bits (93), Expect(3) = 1e-96
 Identities = 32/96 (33%), Positives = 45/96 (46%)
 Frame = -2

Query: 325   ITVSHETVMAKVTFFSLPPASFNEELPANAFDFGKEYLYQDGYISKDSKNSEQDKVDNHQ 384
             +++ HETVM  V   SL   +  E L +N FD   EY      + + ++ + Q+K     
Sbjct: 65880 VSIGHETVMGNV---SLIARAKKEGLSSNIFDTTVEY----SLLEELTETTYQEK----- 65737

Query: 385   GEEAIPKQQWALLEFEKPVTCPKLCLVIGSKLDTDI 420
                      +  +EFEKPV C      I SKLDTDI
Sbjct: 65736 -------DVFVKIEFEKPVCCYPNSNYIASKLDTDI 65650


>gb|GG738850.1| Naegleria gruberi genomic scaffold NAEGRscaffold_6, whole genome shotgun
              sequence
          Length = 707703

 Score =  126 bits (316), Expect = 7e-29
 Identities = 90/304 (29%), Positives = 141/304 (46%), Gaps = 18/304 (5%)
 Frame = -2

Query: 9      NFNVGVLGHIDSGXXXXXXXXXXXXXXXX-----------FDKNPQSKERGITLDLGFSS 57
              + N+G +GH+D G                            DK P+ K+RGIT+      
Sbjct: 506453 HINIGTIGHVDHGKTTLTAAITKYLNELDPKANSFLAYDQIDKAPEEKQRGITISTSHIE 506274

Query: 58     FSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE 117
              ++                +  +DCPGHA  I+ +I GA  +D  +LVI    G   Q+ E
Sbjct: 506273 YATATRH-----------YAHIDCPGHADYIKNMITGAAQMDGSILVISADDGPMLQTRE 506127

Query: 118    CLVI-GQIACNKMVVVLNKIDLLAENKRQAAIDKMTKKMQKTLESTKFHGSPIVSVAAKP 176
               L++  Q+    +VV LNK+DL+ + +    I+ + ++++ T++   F G  I  +    
Sbjct: 506126 HLLLCKQVGIKHIVVFLNKVDLVPDAEM---IEMVEEEIRDTVKQYGFDGDNISIIRGSA 505956

Query: 177    -GGPEAPESVTGL-GISDLIELLKSHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTIL 234
                G E   S  G   I  L++ +      P+RD + PFLM V+  F+I G+GTV TG + 
Sbjct: 505955 LKGLEGDSSEIGTQAIQKLMDAVDKDIPEPERDINKPFLMPVEGVFTISGRGTVATGKVD 505776

Query: 235    SGSISLNDNVEIPALKVT---KKVKSMQMFHKPVSRAMQGDRLGICVTQFDPKLLERG-L 290
               G + L   VE+     T     V  ++MFHK V R   GD LGI +   D K ++RG +
Sbjct: 505775 QGQLKLGAEVEVVGFAPTALKSSVTGIEMFHKLVDRGQAGDNLGILLRGIDKKQIKRGQV 505596

Query: 291    VCTP 294
              +C P
Sbjct: 505595 ICKP 505584


>gb|GG738849.1| Naegleria gruberi genomic scaffold NAEGRscaffold_5, whole genome shotgun
              sequence
          Length = 850158

 Score = 76.3 bits (186), Expect = 8e-14
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 26/304 (8%)
 Frame = -1

Query: 39     DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
              D++ + ++RG+T+D+G   F  P               T++D PGH   I  +I GA   
Sbjct: 518343 DEHEEERQRGVTMDVGVRYFETP-----------NRHVTILDAPGHKDFIPKMITGAAQA 518197

Query: 99     DLMMLVIDVTK-GMQT------QSAECLVIGQ-IACNKMVVVLNKIDLLAENKRQAAIDK 150
              D  +LVID T  G +T      Q+ E L++ + +   +++VV+NK+D +  +K +   D 
Sbjct: 518196 DFAILVIDSTPGGFETGFANGGQTKEHLILARSLGVEQVIVVVNKLDSIGWSKER--YDS 518023

Query: 151    MTKKMQKTLESTKFH---GSPIVSVAAKPGGPEAPESVT---------GLGISDLIELLK 198
              +  ++   +    F    GS +  + A   G +    +T         GL + + I+  +
Sbjct: 518022 IVAQLDDFMRQIGFQTQDGSHVFYIPA--SGLQGENLITKSGSISWYDGLSVVERIDKFE 517849

Query: 199    SHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEIPALKVTKKVKSM 258
                     RD      M+V   +     G  + G I +G+IS  D + I  ++    VKS+
Sbjct: 517848 P----KPRDIEKALRMSVSDVYKSLATGITVAGKIETGTISEGDELVIMPIREVCTVKSI 517681

Query: 259    QMFHKPVSRAMQGDRLGICVTQFDPKLLERGLVCTP-----ESLHTIHAAVISVD-KIPY 312
                   PV     GD + I +   D + L  G +  P     +  +   A + + D KIP 
Sbjct: 517680 LRHKSPVKHGYAGDNVEIGLGSIDIEKLMVGQILCPIGNEIKVTNRFKARIATFDMKIPI 517501

Query: 313    FKGS 316
               KG+
Sbjct: 517500 IKGA 517489


>gb|GG738913.1| Naegleria gruberi genomic scaffold NAEGRscaffold_69, whole genome
             shotgun sequence
          Length = 236320

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 21/276 (7%)
 Frame = -2

Query: 39    DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
             DK    +ERGIT+D+    F             ++  FT++D PGH   I+ +I G    
Sbjct: 70614 DKLKAERERGITIDIALWKFES-----------KKYVFTIIDAPGHRDFIKNMITGTSQA 70468

Query: 99    DLMMLVIDVTKG-------MQTQSAE-CLVIGQIACNKMVVVLNKID---LLAENKRQAA 147
             D+ +LV+D T G          Q+ E  L+   +   +M+V +NK D   +   +KR   
Sbjct: 70467 DVAILVVDSTNGGFEAGFSKDGQTREHALLAYTLGIKQMIVCMNKFDDTTVKYSDKRYEE 70288

Query: 148   IDKMTKKMQKTLESTKFHGSP----IVSVAAKPGGPEAPES-----VTGLGISDLIELLK 198
             I     +  K+L      G P     V ++   G     +S       G  + D ++ L 
Sbjct: 70287 IKSEVGRYLKSLGFQTEEGKPNCVQFVPISGWTGDNMIEKSDKMPWYKGPCLLDALDNLV 70108

Query: 199   SHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEI-PALKVTKKVKS 257
                  P R    P  + +   + I G GTV  G + +G +     V   P      +VKS
Sbjct: 70107 E----PIRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGKLKPGMMVHFAPGQAADTEVKS 69940

Query: 258   MQMFHKPVSRAMQGDRLGICVTQFDPKLLERGLVCT 293
             ++M H  V  A  GD +G  V       ++RG V +
Sbjct: 69939 VEMHHTSVPEAGPGDNVGFNVKGLSTTDIKRGYVAS 69832


>gb|GG738846.1| Naegleria gruberi genomic scaffold NAEGRscaffold_2, whole genome shotgun
              sequence
          Length = 1001995

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 21/276 (7%)
 Frame = -1

Query: 39     DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
              DK    +ERGIT+D+    F             ++  FT++D PGH   I+ +I G    
Sbjct: 892702 DKLKAERERGITIDIALWKFES-----------KKYVFTIIDAPGHRDFIKNMITGTSQA 892556

Query: 99     DLMMLVIDVTKG-------MQTQSAE-CLVIGQIACNKMVVVLNKID---LLAENKRQAA 147
              D+ +LV+D T G          Q+ E  L+   +   +M+V +NK D   +   +KR   
Sbjct: 892555 DVAILVVDSTNGGFEAGFSKDGQTREHALLAYTLGIKQMIVCMNKFDDESVKYSDKRYEE 892376

Query: 148    IDKMTKKMQKTLESTKFHGSP----IVSVAAKPGGPEAPES-----VTGLGISDLIELLK 198
              I     +  K+L      G P     V ++   G     +S       G  + D ++ L 
Sbjct: 892375 IKSEVGRYLKSLGFQTEEGKPNCVQFVPISGWTGDNMIEKSDKMPWYKGPCLLDALDNLV 892196

Query: 199    SHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEI-PALKVTKKVKS 257
                   P R    P  + +   + I G GTV  G + +G +     V   P      +VKS
Sbjct: 892195 E----PVRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGKLKPGMVVHFAPGQAADTEVKS 892028

Query: 258    MQMFHKPVSRAMQGDRLGICVTQFDPKLLERGLVCT 293
              ++M H  V  A  GD +G  V       ++RG V +
Sbjct: 892027 VEMHHTSVPEAGPGDNVGFNVKGLSTTDIKRGYVAS 891920


>gb|GG738869.1| Naegleria gruberi genomic scaffold NAEGRscaffold_25, whole genome shotgun
              sequence
          Length = 747259

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 21/276 (7%)
 Frame = +2

Query: 39     DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
              DK    +ERGIT+D+    F             ++  FT++D PGH   I+ +I G    
Sbjct: 181799 DKLKAERERGITIDIALWKFES-----------KKYVFTIIDAPGHRDFIKNMITGTSQA 181945

Query: 99     DLMMLVIDVTKG-------MQTQSAE-CLVIGQIACNKMVVVLNKID---LLAENKRQAA 147
              D+ +LV+D T G          Q+ E  L+   +   +M+V +NK D   +   +KR   
Sbjct: 181946 DVAILVVDSTNGGFEAGFSKDGQTREHALLAYTLGIKQMIVCMNKFDDESVKYSDKRYEE 182125

Query: 148    IDKMTKKMQKTLESTKFHGSP----IVSVAAKPGGPEAPES-----VTGLGISDLIELLK 198
              I     +  K+L      G P     V ++   G     +S       G  + D ++ L 
Sbjct: 182126 IKSEVGRYLKSLGFQTEEGKPNCVQFVPISGWTGDNMIEKSDKMPWYKGPCLLDALDNLV 182305

Query: 199    SHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEI-PALKVTKKVKS 257
                   P R    P  + +   + I G GTV  G + +G +     V   P      +VKS
Sbjct: 182306 E----PVRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGKLKPGMVVHFAPGQAADTEVKS 182473

Query: 258    MQMFHKPVSRAMQGDRLGICVTQFDPKLLERGLVCT 293
              ++M H  V  A  GD +G  V       ++RG V +
Sbjct: 182474 VEMHHTSVPEAGPGDNVGFNVKGLSTTDIKRGYVAS 182581


>gb|GG738906.1| Naegleria gruberi genomic scaffold NAEGRscaffold_62, whole genome shotgun
              sequence
          Length = 286411

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 22/316 (6%)
 Frame = +3

Query: 39     DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
              D +   K +G T+++G + F             Q+ ++T++D PGH + +  +I      
Sbjct: 151209 DCSEDEKAKGKTIEVGRAHFET-----------QKKRYTILDAPGHKAYVPNMISATTQA 151355

Query: 99     DLMMLVIDVTKG-------MQTQSAECLVIGQ-IACNKMVVVLNKIDLLAENKRQAAIDK 150
              D+ +LVI   KG          Q+ E  V+ + +  ++++VV+NKID  +  K +   D+
Sbjct: 151356 DVGILVISARKGEFEAGLEKGGQTMEHTVLSKTLGVDQLIVVVNKIDDPSVAKDKVRYDE 151535

Query: 151    MTKKMQKTLESTKFHGSPIVSVAAKPGGPEAPESVTGLGIS------------DLIELLK 198
              +  K+  TL+   ++    V            +++TG  IS             LIE L 
Sbjct: 151536 IVTKVSATLKGVGWNLKTQVQFI-------PIDALTGQNISSRNLNVPWYSGPSLIEALD 151694

Query: 199    SHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEIPALKVTKKVKSM 258
                      D + P  + +   +  KG  TV+ G +LSG I +   V +   K   +V ++
Sbjct: 151695 DIKLTAVHDVNAPLRLPIIDRYRDKG-CTVVLGKVLSGQIKIGQKVVVMPNKCVCEVIAL 151871

Query: 259    QMFHKPVSRAM--QGDRLGICVTQFDPKLLERGLVCTPESLHTIHAAVISVDKIPYFKGS 316
              +     +   +   G+ + + +   D  +     VC PE L         ++ +  F GS
Sbjct: 151872 KSHEINIHGGVVSAGENVELYLKGDDDNIASGHTVCDPEHL---------LEPVQEFIGS 152024

Query: 317    LQTKAKFHITVSHETV 332
                    FHI  S E V
Sbjct: 152025 ------FHILDSSEHV 152054


>gb|GG738872.1| Naegleria gruberi genomic scaffold NAEGRscaffold_28, whole genome shotgun
              sequence
          Length = 413107

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 23/232 (9%)
 Frame = +3

Query: 77     TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACNKMVVVL-N 134
              + VDCPGH  L+ T++ GA ++D  +L+I   +   Q Q++E L   +I   K +++L N
Sbjct: 113121 SFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCPQPQTSEHLAAVEIMKLKHIIILQN 113300

Query: 135    KIDLLAENKRQAAIDKMTKKMQKTLESTKFHGSPIVSVAAKPGGPEAPESVTGLGISDLI 194
              KIDL+ E+      D    ++++ ++ T    SPI+ ++A+              I  + 
Sbjct: 113301 KIDLVKESDALNQFD----EIKRFVKGTVADNSPIIPISAQ----------LKYNIDVVC 113438

Query: 195    ELLKSHTYLPQRDPHGPFLMAVDHCFSIKG--------QGTVMTGTILSGSISLNDNVE- 245
              E +     +P RD      + V   F +          +G V  G+IL G + + D +E 
Sbjct: 113439 EHIVKRIPIPIRDFTSSPRLIVIRSFDVNKPGEAVENLKGGVAGGSILRGVLRIGDEIEV 113618

Query: 246    ------------IPALKVTKKVKSMQMFHKPVSRAMQGDRLGICVTQFDPKL 285
                          I    +T K+ S+      +  A+ G  +G+  T+ DP L
Sbjct: 113619 RPGIVTKEKDGTIKCKPITSKIVSLFAEENALQYAVPGGLIGV-GTKIDPTL 113771



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 29/105 (27%), Positives = 51/105 (48%)
 Frame = +3

Query: 200    HTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEIPALKVTKKVKSMQ 259
              +T + Q +     + AV     I G GT + G ++SGSI  +  V+I    +   VKS++
Sbjct: 355974 NTQITQNNEGDSLVYAVMGKEKIGGIGTTVIGRVISGSIQFDQEVKITET-ILSNVKSLE 356150

Query: 260    MFHKPVSRAMQGDRLGICVTQFDPKLLERGLVCTPESLHTIHAAV 304
              +FH+  ++  +GD  G+ +       + RG +   +  HT  A V
Sbjct: 356151 IFHENQTKVNRGDFCGVALKNVRMVDITRGSLIGIDPSHTFEAIV 356285


>gb|GG738860.1| Naegleria gruberi genomic scaffold NAEGRscaffold_16, whole genome
             shotgun sequence
          Length = 536960

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
 Frame = +1

Query: 14    VLGHIDSGXXXXXXXXXXXXXXXXFDKNPQSKERG-ITLDLGFSSFSVPVPEH----LAG 68
             VLGH+D G                   N QS E G IT  +G +   +   +     L  
Sbjct: 14347 VLGHVDVGKTKILDKIR--------STNVQSGEAGGITQQIGATYVPIDAIKKQTFKLNE 14502

Query: 69    TGYQRLQFTL-----VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQ 123
             +  ++LQ+ L     +D PGH S       G+ + D+ +LVID+  G++ Q+ E L + +
Sbjct: 14503 SVKKQLQYNLPGLLIIDTPGHESFNNLRSRGSSLCDIAILVIDIKHGLERQTIESLQLIK 14682

Query: 124   IACNKMVVVLNKIDLLAENKR--QAAIDKMTKKMQKTL 159
                   +V LNK+D L E K    A I +  K  +K +
Sbjct: 14683 NRKTPFIVALNKVDALYEWKATPNAPIRESLKNQKKNV 14796


>gb|GG738863.1| Naegleria gruberi genomic scaffold NAEGRscaffold_19, whole genome shotgun
              sequence
          Length = 467654

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 3/184 (1%)
 Frame = -3

Query: 77     TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACNKMVVVLNKI 136
              T +D PGH +       GAQ+ D+++LV+    G+  Q+ E +   + A   M+V +NKI
Sbjct: 215004 TFIDTPGHEAFTSMRSCGAQVTDIIVLVVAADDGVMPQTREVIKHAREANVPMIVAINKI 214825

Query: 137    DLLAENKRQAAIDKMTKKM--QKTLESTKFHGSPIVSVAAKPGGPEAPESVTGLGISDLI 194
              D     K  A ++ + + +  +  +   K   +  + ++A          + G G+ DLI
Sbjct: 214824 D-----KPNADVEMVERHLMNEGIVSEEKGGDTQFIPISA----------LKGKGLKDLI 214690

Query: 195    ELLKSHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSG-SISLNDNVEIPALKVTK 253
              E +     + +          VD   ++  QGTV+   +L G  IS    V   ALKV K
Sbjct: 214689 EAIGLQAEMLE------LKAMVD---NVPMQGTVIECKVLHGFGISATCIVRRGALKVGK 214537

Query: 254    KVKS 257
               V S
Sbjct: 214536 WVVS 214525


  Database: N.gruberi/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 40,964,085
  Number of sequences in database:  784
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,840,108
Number of Sequences: 784
Number of extensions: 311777
Number of successful extensions: 1391
Number of sequences better than 1.0e-03: 10
Number of HSP's better than  0.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 658
length of query: 575
length of database: 13,654,695
effective HSP length: 107
effective length of query: 468
effective length of database: 13,570,807
effective search space: 6351137676
effective search space used: 6351137676
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 99 (42.7 bits)
