TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    73   2e-13
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    71   8e-13

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
 Frame = -2

Query: 88     VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145
              V+ VDCPGH  L+ T++ GA ++D  +L++   +   Q Q++E L   +I   K +++L 
Sbjct: 450916 VSFVDCPGHDILMSTMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMKLKHIIILQ 450737

Query: 146    NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205
              NK++L+ E + Q    +  K+++  +  T  + APIIP+                 I  L
Sbjct: 450736 NKVELIKEAQAQ----EQYKQIKDFVAGTSAQDAPIIPI----------SAVLKFNIDVL 450599

Query: 206    IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257
               E + +QI IP RD +    M +   F +          +G V  G+I+ G + +GD +E
Sbjct: 450598 CEYICTQIPIPIRDFTSSPRMIIIRSFDVNKPGEDAQNMRGGVAGGSIIKGVLKIGDEIE 450419

Query: 258    I-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297
              + P +             +  K+ S+   H  +  A+ G  +G+  T+ DP L
Sbjct: 450418 VRPGIYNKDADGEFTCRPIRSKIVSLFAEHNDLKYAVSGGLIGV-GTKIDPTL 450263


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 66/280 (23%), Positives = 111/280 (39%), Gaps = 11/280 (3%)
 Frame = -3

Query: 37     DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
              DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 928935 DKLKAERERGITIDIALWQFETP-------------------------KYHYTVIDAPGH 928831

Query: 97     ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE------CLVIGQIACQKLVVVLNKIDL 150
                 I+ +I G    D+ +LV+   +     S E       L+   +  ++++V +NK+D 
Sbjct: 928830 RDFIKNMITGTSQADVALLVVPADRFEGAFSKEGQTREHALLAFTLGVRQMIVGINKMDT 928651

Query: 151    LPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP-----EL 205
                   +Q+  D++  ++   L+   +    I P                  +P      L
Sbjct: 928650 CEY--KQSRFDEIFNEVDGYLKKVGYNTEKI-PFVAISGFVGDNMVERSDKMPWYKGKTL 928480

Query: 206    IELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVK 265
              +E L + +  P R    P  + +   + I G GTV  G + +G I  G +V      V  
Sbjct: 928479 VEALDT-MEPPKRPTDKPLRLPLQDVYKIGGVGTVPVGRVETGIIRPGMNVTFAPAGVTT 928303

Query: 266    KVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A+ GD +G  V     K ++RG V +
Sbjct: 928302 EVKSVEMHHEQMPEAVPGDNVGFNVKNVSIKDIKRGFVAS 928183



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 36/64 (56%)
 Frame = +3

Query: 88     VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
              + L+D PGH      +I   +I D  +L++DV +G+  Q+ + L        K+++VLNK
Sbjct: 922611 INLIDSPGHVDFTYEVISSLRISDGALLLVDVAEGIGDQTRKVLQHAFKERLKIILVLNK 922790

Query: 148    IDLL 151
              +D L
Sbjct: 922791 MDRL 922802



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +2

Query: 91     VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDL 150
              +D PGH S       G+ + D+ +LV+D+  G++ Q+ E + + +      ++ LNKID 
Sbjct: 519548 IDTPGHESFNNLRSRGSSLCDIAVLVVDIMHGLEPQTRESIGLLRSRKCPFIIALNKIDR 519727

Query: 151    L 151
              L
Sbjct: 519728 L 519730


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,430,370
Number of Sequences: 8
Number of extensions: 55450
Number of successful extensions: 208
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 111
length of query: 596
length of database: 3,034,108
effective HSP length: 97
effective length of query: 499
effective length of database: 3,033,332
effective search space: 1513632668
effective search space used: 1513632668
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)
