TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.5 of Capsaspora owczarzaki ATCC 30864                   177   2e-78
supercontig_1.2 of Capsaspora owczarzaki ATCC 30864                   110   3e-24
supercontig_1.16 of Capsaspora owczarzaki ATCC 30864                   61   2e-09
supercontig_1.17 of Capsaspora owczarzaki ATCC 30864                   48   2e-05

>supercontig_1.5 of Capsaspora owczarzaki ATCC 30864
          Length = 1755934

 Score =  177 bits (449), Expect(3) = 2e-78
 Identities = 139/471 (29%), Positives = 208/471 (44%), Gaps = 130/471 (27%)
 Frame = -3

Query: 255   SVEIPALKVVKKVKSMQMFHMPIT------------------------------------ 278
             ++EIP  K+ +K+KS+QMFH P+                                     
Sbjct: 66953 NIEIPTAKLSRKIKSIQMFHRPVQQITAVKEASDSKGRS*TFGLFFFFCFFVFVSCNQKA 66774

Query: 279   ---SAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKF 335
                +  QGDR GICVTQFD   LERG  CA  ++   HA +  V+K+ +F+ P+ +K++F
Sbjct: 66773 DLLAKTQGDRAGICVTQFDASTLERGYACAAGAVIFAHALIARVDKVRFFKLPVLSKSRF 66594

Query: 336   HITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLT---------- 385
             H       + G +     +     Q P +    + + +        K ++          
Sbjct: 66593 HGRRASLKLTGGVCGLI*SSGAPAQCPWVTKL*WERPHSLHAVSKQKSVSGEAAWPF*PF 66414

Query: 386   -----PAVTDND-----EADKKAGQATEGHCPRQQ--------------WALVEFEKPVT 421
                   A  D +     E DK+   A E   P Q+              +AL+E + PV 
Sbjct: 66413 YSCVVRASLDGEGNARFEVDKEYAFAEELGRPPQENASNSGQPPAPLATFALIELDHPVA 66234

Query: 422   CPRLCLVIGSR--LDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLV 479
             C    L+IGSR  LD D+HT  CRLAF G +   L D++Y ++FLP+LKV+K K + G V
Sbjct: 66233 CLSNALLIGSRLDLDPDVHTKACRLAFSGRVHEALTDKSYRETFLPKLKVFKRKSRTGTV 66054

Query: 480   ERA----------------------------------MDDYSVIGRSLFKKETNIQLFVG 505
             ER                                   +DDY++IG+ LFKKET ++ F+G
Sbjct: 66053 ERVRAPRVLVLPMGVFPHSQFAVLMPVLFCATTQTQILDDYTLIGKGLFKKETTLEPFLG 65874

Query: 506   LKVHLST---------------------GELGIIDSAFGQSGKFKIHIPGGLSPESKKIL 544
             L+V LS+                     GE+G I+ AFGQSGKF++ +   +S  +K  L
Sbjct: 65873 LQVGLSSGKQVELETSVACRSDSKASPAGEVGEIEGAFGQSGKFRVRMRQAVSDATKATL 65694

Query: 545   TPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQS 595
               + K +   G+G+A   E  A        + + L+FKRYV+D  KRM+QS
Sbjct: 65693 AASDKPK---GKGKAPAPEAEA--------IEIVLSFKRYVYDRQKRMIQS 65574



 Score =  100 bits (250), Expect(3) = 2e-78
 Identities = 65/160 (40%), Positives = 77/160 (48%), Gaps = 62/160 (38%)
 Frame = -3

Query: 87    QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE----------------- 129
             Q TLVDCPGHA LIRTIIGGAQIID+MMLV+DV KG+QTQ+AE                 
Sbjct: 67781 QFTLVDCPGHADLIRTIIGGAQIIDMMMLVVDVNKGIQTQTAEVRTHNLSLSGFARMLLT 67602

Query: 130   -------------CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDK-------------- 162
                          CLVIG+I C  LVV LNKID +PE +R   I+K              
Sbjct: 67601 LARNPPPSSRLAQCLVIGEIMCDILVVALNKIDQIPEDQRAQTIEKARLA*NERSSFLCS 67422

Query: 163   ------------------MTKKMQKTLENTKFRGAPIIPV 184
                               +T+ + KT   TKF    +IPV
Sbjct: 67421 LLTWGGGFRAVPTTVWMQVTRGLAKTFATTKFGQVAVIPV 67302



 Score = 55.5 bits (132), Expect(3) = 2e-78
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = -2

Query: 207   ELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGD 254
             ++L   +     D + PF+ +VDHCF+IKGQGTV+TGT LSG I + +
Sbjct: 67182 QVLAKSVPRQRHDSAAPFVFAVDHCFAIKGQGTVLTGTALSGQIQVNE 67039


>supercontig_1.2 of Capsaspora owczarzaki ATCC 30864
          Length = 2668053

 Score =  110 bits (275), Expect = 3e-24
 Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%)
 Frame = +2

Query: 91      VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKID 149
               VDCPGHA  I+ +I GA  +D  +LV+  T G   Q+ E L++  Q+  + LVV +NK D
Sbjct: 2000582 VDCPGHADYIKNMITGAAQMDGAILVVAGTDGQMPQTREHLLLAKQVGVKALVVYINKAD 2000761

Query: 150     LLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXIPELIE 207
                + E K Q  + +M  +M++ L   KF G   PII                   I +L++
Sbjct: 2000762 AVAE-KDQLELVEM--EMREILNEYKFDGDNTPIIIGSALCALEDREPELGRQSILKLLD 2000932

Query: 208     LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL---KVV 264
                + + I  P+RD   PFLMS++  FSI G+GTV TG +  G ++ GD VEI       + 
Sbjct: 2000933 AVDNFIPQPSRDLDKPFLMSIEDVFSIGGRGTVATGRVERGIVNKGDEVEIVGFGTTPIK 2001112

Query: 265     KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG-LVCAPESL 309
                 V  ++MFH  +     GD LG  +     + L RG ++CAP +L
Sbjct: 2001113 TTVTGLEMFHKQLERGEAGDNLGALLRGVKREDLRRGHMICAPGTL 2001250


>supercontig_1.16 of Capsaspora owczarzaki ATCC 30864
          Length = 797998

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 67/292 (22%), Positives = 110/292 (37%), Gaps = 25/292 (8%)
 Frame = -3

Query: 37     DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
              DK    RERGIT+D+    F                               VT++D PGH
Sbjct: 232604 DKLKAERERGITIDIALWKFETS-------------------------KFYVTIIDAPGH 232500

Query: 97     ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
                 I+ +I G    D  +L++          ++K  QT+    L+   +  ++L+V +NK
Sbjct: 232499 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKDGQTRE-HALLAYTLGVKQLIVGINK 232323

Query: 148    IDLLP--EGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP-- 203
              +D +   E +    + +++  ++K   + K      +P+                     
Sbjct: 232322 MDSIKFAEERYNEIVTEVSNYIKKIGYDPKT--VAFVPISGWHGDNMLEASENMPWFKGW 232149

Query: 204    ------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251
                           LIE L + IS P R    P  + +   + I G GTV  G + +G + 
Sbjct: 232148 TIERKEGNASGKTLIEALDA-ISPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 231972

Query: 252    LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303
               G  V      V  +VKS++M H  +  A  GD +G  V     K + RG V
Sbjct: 231971 PGMVVTFAPSNVTTEVKSVEMHHESLPEANPGDNVGFNVKNVAVKDIRRGNV 231816


>supercontig_1.17 of Capsaspora owczarzaki ATCC 30864
          Length = 792894

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 9/152 (5%)
 Frame = +3

Query: 37     DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
              D  P  RE+G T+++G + F                              + T++D PGH
Sbjct: 585975 DTNPDEREKGKTVEVGRATFGTS-------------------------KKRFTILDAPGH 586079

Query: 97     ASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQKLVVVLNK 147
               S +  +IGGA   D+ +LVI   KG          QT+    +++     + LVVV+NK
Sbjct: 586080 KSYVPNMIGGAAQADVAVLVISARKGEFETGFERGGQTRE-HAMLVKTAGVKHLVVVINK 586256

Query: 148    IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGA 179
              +D    G  Q   D+   K+   L+   +  A
Sbjct: 586257 MDDPTVGWAQERYDECVSKLTPYLKQCGYNTA 586352


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,358,665
Number of Sequences: 89
Number of extensions: 255515
Number of successful extensions: 1304
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 742
length of query: 596
length of database: 9,347,932
effective HSP length: 105
effective length of query: 491
effective length of database: 9,338,587
effective search space: 4585246217
effective search space used: 4585246217
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)
