TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|147898771|ref|NP_001085619.1| eukaryotic elongation factor,
selenocysteine-tRNA-specific [Xenopus laevis]
         (575 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    89   2e-18
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    61   6e-10
gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno...    55   3e-08
gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno...    43   2e-04

>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 10/265 (3%)
 Frame = +2

Query: 39     DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
              DK    +ERGIT+D+    F  P           R ++T++D PGH   I+ +I G    
Sbjct: 137837 DKLKAERERGITIDIALWKFETP-----------RYEYTVIDAPGHRDFIKNMITGTSQA 137983

Query: 99     DLMMLVIDVTKGMQTQSAE------CLVIGQIACNKMVVVLNKIDLLAENKRQAAIDKMT 152
              D+ +LV+   +     S E       L+   +   +M+V +NK+D    + +Q+  D++ 
Sbjct: 137984 DVALLVVPADRFEGAFSKEGQTREHALLAFTLGVKQMIVGINKMDTC--DYKQSRYDEIH 138157

Query: 153    KKMQKTLESTKFHGS--PIVSVAAKPGGP--EAPESVTGLGISDLIELLKSHTYLPQRDP 208
               +++  L+   ++    P V+++   G    E  + +       L+E L +    P+R  
Sbjct: 138158 NEVEGYLKKVGYNIEKIPFVAISGFVGDNMVEKSDKMPWYKGRTLVEALDTMEP-PKRPT 138334

Query: 209    HGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNVEIPALKVTKKVKSMQMFHKPVSRA 268
                P  + +   + I G GTV  G + +G I    NV    + +T +VKS++M H+ +S A
Sbjct: 138335 EKPLRLPLQDVYKIGGVGTVPVGRVETGIIKPGMNVTFAPVGITTEVKSVEMHHEQLSEA 138514

Query: 269    MQGDRLGICVTQFDPKLLERGLVCT 293
                GD +G  V     K ++RG V +
Sbjct: 138515 GPGDNVGFNVKNVSIKDIKRGYVAS 138589



 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -1

Query: 78     LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACNKMVVVLNKID 137
              L+D PGH      +    ++ D  ++++DV +G+  Q+ + L    I   +M++VLNK+D
Sbjct: 143776 LIDSPGHVDFAHEVSSALRLCDGALILVDVVEGLGDQTRKVLQQAYIERVQMLLVLNKMD 143597

Query: 138    LL 139
               L
Sbjct: 143596 RL 143591


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole genome
               shotgun sequence
          Length = 1324930

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 70/324 (21%), Positives = 132/324 (40%), Gaps = 49/324 (15%)
 Frame = -1

Query: 11      NVGVLGHIDSGXXXXXXXXXXXXXXXXFDKNPQSKERGITLDLGFSSFSV--------PV 62
               N+G +GH+  G                 D+    KER IT+ LG+++  +        P 
Sbjct: 1322056 NLGTIGHVAHGKSTVVRAISGVQTVRFKDE----KERNITIKLGYANAKIYKCSNPDCPP 1321889

Query: 63      PEHLAGTGYQR------------------LQFTLVDCPGHASLIRTIIGGAQIIDLMMLV 104
               P+     G  +                     + VDCPGH  L+ T++ GA ++D  +L+
Sbjct: 1321888 PQCYRSYGSSKEDEPICEVSGCNHKMKLMRHVSFVDCPGHDILMSTMLNGAAVMDAALLL 1321709

Query: 105     IDVTKGM-QTQSAECLVIGQIACNKMVVVL-NKIDLLAENKRQAAIDKMTKKMQKTLEST 162
               +   +   Q Q++E L   +I   + +++L NK++L+    ++A   +  K+++  +  T
Sbjct: 1321708 VAGNESCPQPQTSEHLAAVEIMKLRHIIILQNKVELI----KEAQAIEQHKQIKDFVAGT 1321541

Query: 163     KFHGSPIVSVAAKPGGPEAPESVTGLGISDLIELLKSHTYLPQRDPHGPFLMAVDHCFSI 222
                   + I+ ++A          V    I  L E + +   +P RD      M V   F +
Sbjct: 1321540 SAQDAAIIPISA----------VLKFNIDVLCEYICTQIPIPIRDFTSSPRMIVIRSFDV 1321391

Query: 223     KG--------QGTVMTGTILSGSISLNDNVEI-PAL------------KVTKKVKSMQMF 261
                         +G V  G+I+ G + L D +E+ P +             +  ++ S+   
Sbjct: 1321390 NKPGEDAKSMRGGVAGGSIIRGVLKLGDEIEVRPGIYNKNSEGAFVCRPIRSRIVSLFAE 1321211

Query: 262     HKPVSRAMQGDRLGICVTQFDPKL 285
               H  +  A+ G  +G+  T+ DP L
Sbjct: 1321210 HNDLQYAVSGGLIGV-GTKIDPTL 1321142


>gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole
              genome shotgun sequence
          Length = 528544

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 37/296 (12%)
 Frame = -1

Query: 39     DKNPQSKERGITLDLGFSSFSVPVPEHLAGTGYQRLQFTLVDCPGHASLIRTIIGGAQII 98
              D N + + +G T+++G + FS+           +  +FT++D PGH S +  +I GA   
Sbjct: 391063 DTNEEERSKGKTVEVGRAQFSL-----------ENRRFTILDAPGHKSFVPNMISGASQA 390917

Query: 99     DLMMLVIDVTKGM---------QTQSAECLVIGQIACNKMVVVLNKIDLLAENKRQAAID 149
              D+ +L+I   KG          QT+    ++   +  N+++V +NK+D       +    
Sbjct: 390916 DIGVLIISARKGEFETGFERGGQTRE-HAMLAKTLGVNQLIVAINKMDDPTCQWDETRYK 390740

Query: 150    KMTKKMQKTL---------------------ESTKFHGSPIVSVAAKPGGPEA----PES 184
               + KK+   L                     ++ K+H S       K   P+A     + 
Sbjct: 390739 DIQKKLTPYLKICGYNPNKDIFFVPISGQLGQNLKYHVSD--KSNTKYYEPKAFWYSTDQ 390566

Query: 185    VTGLGISDLIELLKSHTYLPQRDPHGPFLMAVDHCFSIKGQGTVMTGTILSGSISLNDNV 244
               T   I D I  +          P  P ++ +      +  G +  G I  G I+  D++
Sbjct: 390565 PTLFDIMDKIISVPDRGINSSGIPIDPEVVRIPLLDGYRDNGVIAMGKIELGIINCGDSL 390386

Query: 245    EIPALKVTKKVKSMQMFH--KPVSRAMQGDRLGICVTQFDPKLLERGLV-CTPESL 297
               +   KV  K++S+ +    +  S +  G+ + + +   D   L +G V C+P SL
Sbjct: 390385 VVMPNKVKVKIQSIWLGEDTEEYSWSGPGENVRLKLVNIDEDSLNKGFVLCSPSSL 390218


>gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole
              genome shotgun sequence
          Length = 772423

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
 Frame = -2

Query: 14     VLGHIDSGXXXXXXXXXXXXXXXXFDKNPQSKERG-ITLDLGFSSFSVPVPEHLAGTGYQ 72
              +LGH+D+G                   N Q  E G IT  +G + F    P  +     +
Sbjct: 152463 ILGHVDTGKTKILDKMRKT--------NIQDNEAGGITQQIGATFF----PPEMLSEQIK 152320

Query: 73     RL--QFTL-------VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQ 123
              R+  +F L       +D PGH S       G+ + D+ +LV+D+  G++ Q+ E + + +
Sbjct: 152319 RVDREFELQIPGLLFIDTPGHESFNNLRSRGSSLCDIAVLVVDIMHGLEPQTKESIGLLR 152140

Query: 124    IACNKMVVVLNKIDLL 139
                    ++ LNKID L
Sbjct: 152139 NRKCPFIIALNKIDRL 152092


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,636,498
Number of Sequences: 84
Number of extensions: 58524
Number of successful extensions: 248
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 124
length of query: 575
length of database: 3,081,750
effective HSP length: 97
effective length of query: 478
effective length of database: 3,073,602
effective search space: 1469181756
effective search space used: 1469181756
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 93 (40.4 bits)
