TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SecS M.musculus
         (504 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743892.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...   211   e-106

>gb|GG743892.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.10, whole
              genome shotgun sequence
          Length = 790954

 Score =  211 bits (536), Expect(4) = e-106
 Identities = 131/292 (44%), Positives = 165/292 (56%), Gaps = 70/292 (23%)
 Frame = +1

Query: 183    GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVIC 242
              G EPVVIENVL+GDELRTDL A+EAK++ELGPE+ILC+ STT+CFAPR  DR++E+A +C
Sbjct: 241720 GLEPVVIENVLDGDELRTDLAALEAKMRELGPENILCVLSTTSCFAPRGYDRVDEIAQLC 241899

Query: 243    ANYDI-----------------PHVVNNAYGLQSSKCMHLIQQ----------------- 268
                YDI                  HV+NNAYGLQSSKC HL+ Q                 
Sbjct: 241900 RQYDIGATSSPLAPCSICIVQLGHVINNAYGLQSSKCTHLVNQVRIY*TLENDDEARVA* 242079

Query: 269    GARVGRIDAFVQSLDKNFMVPVGGAII---AGFNEPFIQDISK----------------M 309
                R+GR+DA +QS DKNF+VPVGGA+I   +G      QD+ +                +
Sbjct: 242080 AFRLGRVDACIQSTDKNFLVPVGGAVISVTSGLCTSDRQDVPRSIASHPPPPPWPCVMTL 242259

Query: 310    YPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 369
                GRAS +P+LD+ IT+L LG  GY+ LL ERK +  Y S  L  +A AH ER+L T HN
Sbjct: 242260 RVGRASNAPALDLFITMLHLGRRGYKALLDERKRLVPYFSAALTSVATAHGERVLVTRHN 242439

Query: 370    P-----------------ISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGAR 404
                                IS  +TL  + G+     T LGSMLF+R VSG R
Sbjct: 242440 DVHIVDTSVPSVRPNLV*ISFCLTLSHVGGND---ATFLGSMLFSRGVSGTR 242586



 Score =  164 bits (414), Expect(4) = e-106
 Identities = 88/178 (49%), Positives = 117/178 (65%), Gaps = 20/178 (11%)
 Frame = +3

Query: 13     VSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGV 72
              V  AY+RQG +A ++HE  +  LL Q K PEDGWD+ ++++ L++LA MDSNNF  N G 
Sbjct: 241104 VDAAYIRQGSDALKSHEKKLTALLAQRKLPEDGWDDLSIQVLLNDLAQMDSNNFAHNAGA 241283

Query: 73     GEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLA--- 129
              GERE RVAS+LV  R +   HG+GRSGDI AVQPKAAGSSLL ++TN LVL+++ LA   
Sbjct: 241284 GEREARVASSLVRNRCFHLAHGVGRSGDICAVQPKAAGSSLLVQLTNCLVLDMLHLAGRR 241463

Query: 130    -----------GVHSVASCFVVPMATGMSLTLCFLTLRHK-----RPKAK-YIIWPRI 170
                         G+ +  S  V+P+ATGM+L    LTL+ +     RP  K Y++WPRI
Sbjct: 241464 RIPCSDFIV*LGIKNAKSAIVLPVATGMALLFAMLTLQAQARVPGRPHTKRYVLWPRI 241637



 Score = 46.6 bits (109), Expect(4) = e-106
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 17/63 (26%)
 Frame = +3

Query: 413    TVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQ-----------------DVDLFIKRLD 455
              T+ GH F GF +H+  YP AYL+AA AIGM                    ++D+FI RL+
Sbjct: 242658 TIVGHAFEGFGAHSATYPTAYLSAACAIGMTQDVRDSIFPHKSIKLIQ**EIDVFIARLN 242837

Query: 456    KCL 458
              K L
Sbjct: 242838 KTL 242846



 Score = 28.5 bits (62), Expect(4) = e-106
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 172    QKSCFKSMVTAG 183
              QKSCFKSMVTAG
Sbjct: 241640 QKSCFKSMVTAG 241675


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,336,944
Number of Sequences: 1445
Number of extensions: 535311
Number of successful extensions: 3315
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2455
Number of HSP's gapped (non-prelim): 1701
length of query: 504
length of database: 17,710,878
effective HSP length: 108
effective length of query: 396
effective length of database: 17,554,818
effective search space: 6951707928
effective search space used: 6951707928
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)
