TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SecS D.rerio
         (490 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01001454.1| Hyaloperonospora parasitica strain Emoy2 v-7....   105   9e-42
gb|ABWE01000154.1| Hyaloperonospora parasitica strain Emoy2 v-7....    65   2e-12

>gb|ABWE01001454.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont60.4, whole genome
             shotgun sequence
          Length = 13529

 Score =  105 bits (262), Expect(3) = 9e-42
 Identities = 46/81 (56%), Positives = 60/81 (74%)
 Frame = -3

Query: 249   HIVNNAYGVQPSKCMHLIQQGARVGRIDAFVQSLDKNFVVPVGGAIIAGFDENFIQEISK 308
             H++NNAYGVQ S C+H I    R+GR+DA VQSLDKNF+VPVGGAI+       +  ++K
Sbjct: 13005 HVINNAYGVQASACVHQIDLAMRIGRVDAVVQSLDKNFLVPVGGAIVCSTSSEIVDSVAK 12826

Query: 309   IYPGRASASPSLDVLITLLTL 329
              YPGRASA+P+LD  IT+L +
Sbjct: 12825 FYPGRASATPALDFFITMLQM 12763



 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = -2

Query: 150   LCFLTLRHRRPKARYILWPRIDQKSCFKSMVTAGFEPVVIENVL 193
             L  L L+  RP ARY++WPR+DQKSCFK+++ AG  P+V+ N L
Sbjct: 13402 LVLLQLKKTRPAARYVIWPRVDQKSCFKAILAAGLTPLVLANCL 13271



 Score = 57.8 bits (138), Expect(3) = 9e-42
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
 Frame = -1

Query: 107   KAAGSSLLNKITNSVVLDVLKLTGVRSVSSCFVVPMATGMSLTLCFLTLRHR-RPKARYI 165
             KAAGSSLL ++ N++  DVL+L G+R+V + +      G        T + + R   R++
Sbjct: 13529 KAAGSSLLVQLANALAKDVLRLAGLRAVQAHWCCL*RLGCRYAGAAATEKDKTRGALRHL 13350

Query: 166   LW--PRIDQKSCFKSMVTAGFEPVVIEN---VLEGDELRTNLEEVERKIEEFGAENTLCV 220
                 P I  +  F     A     +       L G  L+T+L  +   ++++G+E+ L V
Sbjct: 13349 ASGRPEILFQGHFGGRTDATSAGKLFSRGR*SLWG-VLKTDLVGMAALMDQYGSESILAV 13173

Query: 221   HSTTSCFAPRVPDRLEELSVLCAKHDI 247
              STTSCFAPR  D ++E++ LC + +I
Sbjct: 13172 SSTTSCFAPRAYDAVKEIAQLCQERNI 13092



 Score = 48.1 bits (113), Expect(3) = 9e-42
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 29/104 (27%)
 Frame = -1

Query: 330   GANGYKKLLADRKELYGHLAQELSALAARHGERLLKTPHNP------------------- 370
             G NGY++LL +RK L  ++ ++L  LAA  GE +LK   N                    
Sbjct: 12677 GKNGYRRLLEERKHLAAYMREKLEVLAAEEGEHVLKVSTNEVGTIELKLRQCWFSDRLTF 12498

Query: 371   ----ISLAMSLNHL------EAHSSSAVTQLGSMLFTRQVSGAR 404
                 IS AM+L             S  +T LG+MLF+R V GAR
Sbjct: 12497 VRA*ISYAMTLATFCSEVEDRQEKSRRLTLLGAMLFSRGVCGAR 12366


>gb|ABWE01000154.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont60.5, whole
           genome shotgun sequence
          Length = 69632

 Score = 65.1 bits (157), Expect(2) = 2e-12
 Identities = 31/72 (43%), Positives = 48/72 (66%)
 Frame = -2

Query: 1   MNSENFRLSEKLVSASYVRQGLDARRGHEQLIRRLLDQGKCPEEGWSESTIELFLNELAV 60
           M+S+   L+E+LV A+YV+QGL A R   +L+  LL Q   P++GW ++++E+ L  L+ 
Sbjct: 277 MDSKTAALAEQLVPATYVQQGLAAIRSRHKLVSTLLAQRCLPDDGWDDTSVEMLLQTLSA 98

Query: 61  MDSNNFLGNCGV 72
           MDSNNF    G+
Sbjct: 97  MDSNNFRAAYGL 62



 Score = 26.6 bits (57), Expect(2) = 2e-12
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 73 GEREGRVASSLVARRHY 89
          GER  RV S+LVARRH+
Sbjct: 62 GER*ARVFSTLVARRHF 12


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.319    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,237,226
Number of Sequences: 5422
Number of extensions: 564760
Number of successful extensions: 2819
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 2206
Number of HSP's gapped (non-prelim): 1067
length of query: 490
length of database: 22,486,378
effective HSP length: 109
effective length of query: 381
effective length of database: 21,895,380
effective search space: 8342139780
effective search space used: 8342139780
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 100 (43.1 bits)
