TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SecS M.musculus
         (504 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...   396   e-111

>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score =  396 bits (1018), Expect = e-111
 Identities = 208/460 (45%), Positives = 294/460 (63%)
 Frame = +2

Query: 15     PAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGE 74
              PAYV     ARR+   L R LL Q +    G DE T+ L + ELA +D+N F+    VGE
Sbjct: 427280 PAYVTVAEAARRSRTALFRQLLTQRRLLPQGLDEHTVRLLVDELAGLDANQFIDQANVGE 427459

Query: 75     REGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSV 134
              REGR+ S LV  RH+   HG+GR+GD++A QPKA G+S+L ++  +L+L+ + +AG  S 
Sbjct: 427460 REGRIYSELVRARHFGMAHGMGRAGDLAASQPKACGASILVRLCAALLLDALHVAGFRSC 427639

Query: 135    ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLE 194
                  ++P+ATGM++TLC L LR +RP A  ++W RIDQK+C K +  AG++  V+EN L+
Sbjct: 427640 RRVALLPIATGMAMTLCLLALRWQRPAADRVLWIRIDQKACLKCIRAAGYQIDVLENKLD 427819

Query: 195    GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNA 254
              GD++ TD++A+E ++    P     + STT+CFAPR PDR+  +A +CA Y IPH++N+A
Sbjct: 427820 GDQVVTDMEALEKRLAASDPSRYAAVISTTSCFAPRAPDRVVAIAQLCARYGIPHLINHA 427999

Query: 255    YGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRA 314
              YG+QS +C  L+    R+GR+DA + S DKNFMVPVGGA +AG +  FI+ +  +YPGRA
Sbjct: 428000 YGVQSRRCNGLVCAACRLGRVDAVIFSFDKNFMVPVGGAGVAGTSPTFIEAVESLYPGRA 428179

Query: 315    SASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLA 374
              S +P +D+ ITLL LG  G+  LL+ER+  F     QL  +   H ERLL TP NPIS A
Sbjct: 428180 SVAPVVDLFITLLQLGRDGFSGLLRERERRFQRFQAQLAPVLAKHGERLLHTPDNPISFA 428359

Query: 375    MTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYL 434
              ++L+          T +GSML+ R+ SG RAV     + V G    G+ +H  +YP  YL
Sbjct: 428360 ISLEHTMLEGGIEPTAIGSMLYARRCSGPRAVLGTERRLVQGVLLAGYGAHIADYPVPYL 428539

Query: 435    NAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASVVSGA 474
              N AAAIG++  D++ F +RLD+ L  VR  +  AS  S A
Sbjct: 428540 NLAAAIGIRDIDIERFCRRLDEVLGQVRGTR-HASAASAA 428656


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,095,489
Number of Sequences: 20
Number of extensions: 156677
Number of successful extensions: 914
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 96
length of query: 504
length of database: 5,515,582
effective HSP length: 100
effective length of query: 404
effective length of database: 5,513,582
effective search space: 2227487128
effective search space used: 2227487128
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)
