TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SecS X.tropicalis
         (506 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01001948.1| Ascogregarina taiwanensis Contig2203, whole g...   119   6e-28
gb|ABJQ01004237.1| Ascogregarina taiwanensis CLRanP168-C06.b1.ab...    42   2e-04

>gb|ABJQ01001948.1| Ascogregarina taiwanensis Contig2203, whole genome shotgun sequence
          Length = 1135

 Score =  119 bits (299), Expect = 6e-28
 Identities = 102/334 (30%), Positives = 136/334 (40%), Gaps = 128/334 (38%)
 Frame = +2

Query: 36  VEQGKCPKEPWDESTIEIFLNELAVMDS-------------------------------N 64
           + Q + P EPWDE +I + L ELA MD                                N
Sbjct: 2   LHQRRVPDEPWDELSITLLLQELAGMDM*EIWRRCMG*GIWRGRADPLFRGFAY*LAHRN 181

Query: 65  NFLGNCGVGEREGRVASGMVSRRHYRLIHGIGR------------SGDISAIQPKAAGSS 112
           N     G GEREGR+ S +V RRH+ + HGIGR            SGDI A+QPKAAGSS
Sbjct: 182 NACRVAGAGEREGRIFSPLVYRRHFGMSHGIGRLYLFYAGSSICRSGDIMALQPKAAGSS 361

Query: 113 VLNKLTNSMVLDIIRLAGVR---------------------------------------- 132
           ++N L+  +VLDIIR AG++                                        
Sbjct: 362 LINILSQYLVLDIIREAGIKVSDKSMQSNSLVLVQAHKCATSQSGMLNLYGFRKLQLSDR 541

Query: 133 ----TASSCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA------ 182
               +A+ C V+PMATGM+L  C         +   I+W RIDQKSCFK+M+ +      
Sbjct: 542 LLF*SAAGCLVLPMATGMTLHFCLSQFH----QGSDILWSRIDQKSCFKAMLLSEE*QGK 709

Query: 183 ----GFEPVVIEN----VLEGDELRTDLDAVEAK-------------------ITEL--- 212
                   + I      +L       + +A EAK                   +T +   
Sbjct: 710 YRMHAARSLGISTA*LILLRSSRSEAEDNAGEAKWRCPSN*CRCYQKFVYPEPVTRMFVD 889

Query: 213 -----GAENILCVHSTTSCFAPRVPDRVEELAVI 241
                G +NI CV +TTS FAPR PD V  +A +
Sbjct: 890 ALIAGGKDNIRCVITTTSTFAPREPDDVVAVAKV 991


>gb|ABJQ01004237.1| Ascogregarina taiwanensis CLRanP168-C06.b1.ab1, whole genome
           shotgun sequence
          Length = 818

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +2

Query: 396 FTRQVSGARVVPL-GTSQTINGYVFKGFMSHSNNYPC--AYLNAASAICIKKQDVDMF 450
           F  + SGARVV   G    I GY F+ F SH +NY    AYL AA A+    +++D+F
Sbjct: 101 FLCRCSGARVVECNGKKSEIGGYQFRNFGSHHDNYTVTGAYLTAACAMGASVEEIDLF 274


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,162,321
Number of Sequences: 5379
Number of extensions: 41013
Number of successful extensions: 214
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of query: 506
length of database: 2,049,803
effective HSP length: 91
effective length of query: 415
effective length of database: 1,560,314
effective search space: 647530310
effective search space used: 647530310
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)
