TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169790978|ref|NM_001122648.1| Gallus gallus deiodinase,
iodothyronine, type III (DIO3)
         (274 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    77   9e-15
gb|GL349477.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    75   6e-14
gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    52   4e-07
gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    32   0.34 
gb|GL349447.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    30   1.3  
gb|GL349459.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   5.0  
gb|GL349451.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   5.0  
gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   6.5  
gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   8.4  

>gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.34,
              whole genome shotgun sequence
          Length = 390530

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
 Frame = +1

Query: 92     DFFKSAHV---GSPAPNPEVIQLDGQKR-------LRILDFARGKRPLILNFGSCTXPPF 141
              D F +++V   GSP P+  +++LDG          +  LD +     +ILNFGS T PPF
Sbjct: 249001 DAFPASNVLVEGSPMPDLSLLRLDGSPAALGADIIIPALDSSHATGVVILNFGSWT*PPF 249180

Query: 142    MARLRSFRRLAAHFVDIADFLLVYIEEAHPSDGW---VSSDAAYSIPKHQCLQDRLRAAQ 198
                 +RS   LAA          VYI EAH  D W   V++D     P+ +    RL  A 
Sbjct: 249181 RRNIRSVTELAA--AAETPLFNVYIREAHAEDDWAIEVNTDDDVCFPQPKSTAARLAVAN 249354

Query: 199    LMREGAPDCPLA--VDTMDNASSAAYGAYFERLYVIQEEK----VMYQGGRGPEGYKISE 252
                   A   P A  VD ++N + AA+ A  ERLY I        V+++ G GP  Y +++
Sbjct: 249355 DFVATASLDPAAILVDPIENEAEAAFEARPERLYAIARVSGVLTVVFRTGIGPYMYSVTK 249534

Query: 253    LRSWLD 258
              L+++LD
Sbjct: 249535 LKAFLD 249552


>gb|GL349477.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.45,
              whole genome shotgun sequence
          Length = 310545

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
 Frame = +1

Query: 123    ARGKRPLILNFGSCTXPPFMARLRSFRRLAAHFVDIADFLLVYIEEAHPSDGWVS--SDA 180
              ARG R L++  GS + PP    +  F  LAA +  +ADF+ +YI EAH SD W       
Sbjct: 114889 ARG-RALVVVAGSRS*PPSRRGVPIFNALAADYAHVADFVFLYIVEAHASDEWPMPVGGG 115065

Query: 181    AYSIPKHQCLQDR-LRAAQLMREGAPDCPLAVDTMDNASSAAYGAYFERLYVIQEEKVMY 239
                  P+ + L +R  RAA+ + +   + P+ VD M NA  +AY A+ ER +VI      +
Sbjct: 115066 REPYPQPKSLPERAARAAEYVADYGLELPVYVDCMSNAFESAYAAWPERFFVIDAGVTAF 115245

Query: 240    QGGRGPE-GYKISELRSWLDQYKTRLQSPGAVVI 272
                   P+ G+  +E+ +WL Q +  L  PG  V+
Sbjct: 115246 ISQPVPDKGHDPAEVEAWL-QARAALDGPGPFVV 115344


>gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.10,
             whole genome shotgun sequence
          Length = 578410

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
 Frame = +3

Query: 125   GKRPLILNFGSCTXPPFMARLRSFRRL-----AAHFVDIADFLLVYIEEAHPSDGWVSSD 179
             G+RPL++  GS + PP    +     +       H      +  +Y+EEAH  D W  S 
Sbjct: 43911 GERPLVVIAGSYS*PPIRGMVPMLHEMYDGLRVEHGEAAPAWAFIYVEEAHALDEWPISS 44090

Query: 180   AAY-------SIPKHQCLQDRLRAAQLMREGAP-DCPLAVDTMDNASSAAYGAYFERLYV 231
             + Y       ++ + + + DR  AA    +      P+ +DT+DN     YGA+  R YV
Sbjct: 44091 SRYHPTGEVVAVAQAKTVDDRAEAATHFADLYQLRLPVFLDTLDNEFQTTYGAWPLRFYV 44270

Query: 232   IQEEKVMYQGGRGPEGYKISEL 253
              +   + Y+       Y IS+L
Sbjct: 44271 FEASTLGYKAMPAECTYSISDL 44336


>gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.18,
              whole genome shotgun sequence
          Length = 527020

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -2

Query: 213    TMDNASSAAYGAYFERLYVIQ----EEKVMYQGGRGPEGYKISELRSWLDQYKTRL 264
              T DN  + A  AYFE L +++     E+V +QGGRG        +  WL QY+  L
Sbjct: 380232 TPDNVLTLA--AYFEHLILVRGLDFAEQVFFQGGRGTGLIVTHTVEQWLWQYEDPL 380071


>gb|GL349447.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.15,
              whole genome shotgun sequence
          Length = 583276

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 160    DFLLVYIEEAHPSDGWVSSDAAYSIPKHQC-------LQDRLRAAQLMREGAPDCPLAVD 212
              DFL++ +      + WV+   ++  P+ Q        L+ R   A L+R  AP  P AVD
Sbjct: 310488 DFLVIRMHGNEFYNNWVNGLVSWLEPEMQATLREVLVLRKRGYFAPLIRNEAPVMPSAVD 310667

Query: 213    TMDNAS 218
               ++NAS
Sbjct: 310668 VVNNAS 310685


>gb|GL349459.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.27,
              whole genome shotgun sequence
          Length = 436348

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 237    VMYQGGRGPEGYKISELRSWLDQYKTRLQSPG 268
              V  QGG G +  +  ++RS L + +TRL+S G
Sbjct: 119261 VHLQGGSGEDAQRTFQMRSVLTKVRTRLESDG 119356


>gb|GL349451.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.19,
              whole genome shotgun sequence
          Length = 517691

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 175    WVSSDAAYSIPKHQCLQDRLRAAQ 198
              +  S+ AYS P+H+CL +  R AQ
Sbjct: 484910 YFDSELAYSAPRHRCLDELSRLAQ 484981


>gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.20,
              whole genome shotgun sequence
          Length = 525314

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 193    RLRAAQLMREGAPDCPLAVDTMDNASSAAYGAYFERLYVIQEEKVMYQGGRGPE 246
              RLR A L  E  PD    VD +   +    GA+ ERL      KV    GR PE
Sbjct: 160219 RLRLAPLAAEAKPDAGDRVDAVRMEAKQVCGAWIERLAKDGGRKV--ARGRRPE 160374


>gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.22,
              whole genome shotgun sequence
          Length = 456871

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 185    PKHQCLQDRLRAAQLMREGAPDCPLAVDTMDNASSAAYGAYFERLYVIQ---EEKVMYQG 241
              P +  +Q   RAA +  +G  DC   V T+ +A+ +   A    L+V Q   EE  M  G
Sbjct: 386392 PTYARMQALYRAADMNGDGELDCQEFVHTVLHAAPSFSAAEARALFVAQAGSEEATMAPG 386571

Query: 242    G 242
              G
Sbjct: 386572 G 386574


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.325    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,487,726
Number of Sequences: 131
Number of extensions: 237292
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 152
length of query: 274
length of database: 9,560,209
effective HSP length: 98
effective length of query: 176
effective length of database: 9,547,371
effective search space: 1680337296
effective search space used: 1680337296
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
