TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DI2 Xenopus laevis
         (262 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349477.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    67   2e-11
gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    59   3e-09
gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    45   5e-05
gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    30   1.2  
gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   4.6  

>gb|GL349477.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.45,
              whole genome shotgun sequence
          Length = 310545

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
 Frame = +1

Query: 115    DFASSERPLVVNFGSATXPPFISQLPAFSKLVEEFSSVADFVLVYIDEAHPSDGWAAP-G 173
              D  +  R LVV  GS + PP    +P F+ L  +++ VADFV +YI EAH SD W  P G
Sbjct: 114880 DATARGRALVVVAGSRS*PPSRRGVPIFNALAADYAHVADFVFLYIVEAHASDEWPMPVG 115059

Query: 174    TASYEVKKHRSQEERCAAASKLLQHFSIPPQCQVVADCMDNNANVAYGVSFERVCIVQRQ 233
                     + +S  ER A A++ +  + +  +  V  DCM N    AY    ER  ++   
Sbjct: 115060 GGREPYPQPKSLPERAARAAEYVADYGL--ELPVYVDCMSNAFESAYAAWPERFFVIDAG 115233

Query: 234    KIVYLGGKGP-FFYNIQEIRRWLE 256
                 ++    P   ++  E+  WL+
Sbjct: 115234 VTAFISQPVPDKGHDPAEVEAWLQ 115305


>gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.34,
              whole genome shotgun sequence
          Length = 390530

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
 Frame = +1

Query: 114    LDFASSERPLVVNFGSATXPPFISQLPAFSKLVEEFSSVADFVL--VYIDEAHPSDGWAA 171
              LD + +   +++NFGS T PPF   +    + V E ++ A+  L  VYI EAH  D WA 
Sbjct: 249115 LDSSHATGVVILNFGSWT*PPFRRNI----RSVTELAAAAETPLFNVYIREAHAEDDWAI 249282

Query: 172    PGTASYEV--KKHRSQEERCAAASKLLQHFSIPPQCQVVADCMDNNANVAYGVSFERVCI 229
                    +V   + +S   R A A+  +   S+ P   ++ D ++N A  A+    ER+  
Sbjct: 249283 EVNTDDDVCFPQPKSTAARLAVANDFVATASLDP-AAILVDPIENEAEAAFEARPERLYA 249459

Query: 230    VQRQK----IVYLGGKGPFFYNIQEIRRWLE 256
              + R      +V+  G GP+ Y++ +++ +L+
Sbjct: 249460 IARVSGVLTVVFRTGIGPYMYSVTKLKAFLD 249552


>gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.10,
             whole genome shotgun sequence
          Length = 578410

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
 Frame = +3

Query: 118   SSERPLVVNFGSATXPPFISQLPAFSKL-----VEEFSSVADFVLVYIDEAHPSDGWAA- 171
             + ERPLVV  GS + PP    +P   ++     VE   +   +  +Y++EAH  D W   
Sbjct: 43908 AGERPLVVIAGSYS*PPIRGMVPMLHEMYDGLRVEHGEAAPAWAFIYVEEAHALDEWPIS 44087

Query: 172   -----PGTASYEVKKHRSQEERCAAASKLLQHFSIPPQCQVVADCMDNNANVAYGVSFER 226
                  P      V + ++ ++R  AA+     + +  +  V  D +DN     YG    R
Sbjct: 44088 SSRYHPTGEVVAVAQAKTVDDRAEAATHFADLYQL--RLPVFLDTLDNEFQTTYGAWPLR 44261

Query: 227   VCIVQRQKIVYLGGKGPFFYNIQEI 251
               + +   + Y        Y+I ++
Sbjct: 44262 FYVFEASTLGYKAMPAECTYSISDL 44336


>gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.5,
             whole genome shotgun sequence
          Length = 654703

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 42/141 (29%), Positives = 54/141 (38%)
 Frame = +2

Query: 3     RRERERLSVDLLITLQILPGFFSNCLFLALYDSVVLVKHVLLQLNRSKSSQSQWRRMLTP 62
             RR   RL +DL + L +        L LAL  ++ L   + L L R  SS+  WRR+ T 
Sbjct: 23747 RRLNRRLDLDLDLDLDL-------DLDLALALALALALALALALARRFSSRRLWRRVWTS 23905

Query: 63    EGLRCVWNSFLLDAYKQVKLGQDAPNSNVIQVSNNRTSKSVQRKFAGKCHLLDFASSERP 122
                     S    A K       A  S     S+ R  +    + A  C  LD A S   
Sbjct: 23906 SSELAARTSSRASARKAAAASWRAVES----ASSVRAMRDCALRSARACQ-LDMAMSW-- 24064

Query: 123   LVVNFGSATXPPFISQLPAFS 143
                 +GS    P IS LP  S
Sbjct: 24065 ----YGSFHMTPRISPLPRIS 24115


>gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.20,
              whole genome shotgun sequence
          Length = 525314

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 112    HLLDFASSERPLVVNFGSATXPPFISQLPAFSKLVEEFSSVADFVLVYIDEA 163
              HLLD A S+R  V    +AT    +  +    +++EEF+  A   L  +D A
Sbjct: 236526 HLLDAALSDRSDVREVAAATVASKLYSVGTHREIIEEFAKTAVASLAKLDPA 236681


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,637,213
Number of Sequences: 131
Number of extensions: 195499
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 142
length of query: 262
length of database: 9,560,209
effective HSP length: 97
effective length of query: 165
effective length of database: 9,547,502
effective search space: 1575337830
effective search space used: 1575337830
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
