TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DI1 Xenopus laevis
         (252 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291024.1| Polysphondylium pallidum PN500 unplaced genomic s...    71   9e-13
gb|GL290987.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   2.9  
gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   2.9  

>gb|GL291024.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig27,
             whole genome shotgun sequence
          Length = 200704

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 43/183 (23%)
 Frame = -3

Query: 93    GHSAPNTPVVDLSGELHHIWDYLQGT------------RPLVLSFGSCTUPPFLFRLGEF 140
             G + PN  ++D       I  YL+G             +P+VL  GS T PPF  ++  F
Sbjct: 94067 GDTCPNAMLLDYQTGSDKIEYYLKGNTSLYSLMEKNDAKPVVLFCGSYT*PPFRDKMVMF 93888

Query: 141   NKLVNEFNSIADFLIIYIDEAHAADEWAL-------------------KNNLHIKK---- 177
               + NEF     F I+Y+ E H  D W +                    N +H  K    
Sbjct: 93887 QAIANEFAEYCQFYILYLAEMHPVDGWVIGGDEISTCYKQPKTMKEVRNNPIHFSKGYVF 93708

Query: 178   -----HRSLQ--DRLAAAKRLMEESP-SCPVVLDTMSNLCSAKYAALPERLYILQEGKII 229
                    +LQ   RL   K L E SP + P ++D + N  +AKY A+PERL++L+  K  
Sbjct: 93707 IINLFFLTLQI*QRLNIVKALQEYSPVTIPYLVDLIDNGFNAKYDAIPERLFVLENKKFS 93528

Query: 230   YKG 232
             Y G
Sbjct: 93527 YVG 93519



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
 Frame = -3

Query: 93    GHSAPNTPVVDLSGELHHIWDYLQGT------------RPLVLSFGSCTUPPFLFRLGEF 140
             G + P+  ++D       I  YL+G             +P+VL  GS T  PF  +L   
Sbjct: 92564 GDTCPDAILLDYQTGSDKIEYYLKGNTTLYRMMEKLDAKPIVLYCGSFTCIPFRNKLQLI 92385

Query: 141   NKLVNEFNSIADFLIIYIDEAHAADEWAL 169
               + NEF    DF I+Y  E H AD W +
Sbjct: 92384 QAIANEFAEYCDFYIVYTAEVHTADGWII 92298


>gb|GL290987.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold5,
              whole genome shotgun sequence
          Length = 536480

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = -1

Query: 146    EFNSIADFLIIYIDEAHAADEWALKNNLHIKKHRSLQDRLAAAKRLMEESPSCPVVLDTM 205
              E N +  +L++ + E  +  +W L + LH+  H  +   L     ++    SCP++   +
Sbjct: 505991 EMNLLEVYLVVNVKE*LSLKQWCLDHLLHVGIHLLVVWMLHQLWTMLNH*ESCPILFTRL 505812

Query: 206    SNLCSAKY 213
                L S ++
Sbjct: 505811 PLLLSIRH 505788


>gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1,
              whole genome shotgun sequence
          Length = 1995969

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 87     EDEAFVGHSAPNTPVVDLSGELHHIWDY 114
              E E +V  S P TP+V+   E++ +W +
Sbjct: 905438 EPELWVSSSVPGTPIVEFKKEINSLWKF 905521


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,133,696
Number of Sequences: 42
Number of extensions: 134611
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 26
length of query: 252
length of database: 10,980,844
effective HSP length: 98
effective length of query: 154
effective length of database: 10,976,728
effective search space: 1690416112
effective search space used: 1690416112
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
