TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349496.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   421   e-118
gb|GL349438.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   121   1e-27
gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    97   2e-20
gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    97   4e-20
gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    85   1e-16
gb|GL349467.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    78   2e-14
gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    78   2e-14
gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    69   7e-12
gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    61   2e-09
gb|GL349483.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    60   4e-09
gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    55   1e-07
gb|GL349461.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    52   1e-06
gb|GL349465.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    52   2e-06
gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    49   8e-06

>gb|GL349496.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.64,
             whole genome shotgun sequence
          Length = 195173

 Score =  421 bits (1083), Expect = e-118
 Identities = 240/528 (45%), Positives = 323/528 (61%), Gaps = 33/528 (6%)
 Frame = -2

Query: 2     AGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLP 61
             A R +NVNVG+LGH+DSGKT+LA+ALST ASTAAFDK PQS+ RGITLDLGFS   VPLP
Sbjct: 56038 ASRVLNVNVGLLGHVDSGKTSLAKALSTLASTAAFDKHPQSQVRGITLDLGFSALRVPLP 55859

Query: 62    ARLRS--------SLPEFQAA----------PEAEPEPG-------EPLLQVTLVDCPGH 96
               L            P+  +           P  E E G          +Q TLVDCPGH
Sbjct: 55858 PALAGLRLDGHDDGTPDICSGTTSGNDTGDHPGKEDESGLLTVGDKYDEIQFTLVDCPGH 55679

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKR 156
             ASLI+TIIGGA IID+M+LV+D   G QTQ+AECLVIG++    L+V LNKIDL PE KR
Sbjct: 55678 ASLIKTIIGGASIIDIMVLVVDAKAGFQTQTAECLVIGELTADTLMVALNKIDLFPEEKR 55499

Query: 157   QAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIP 216
              + + KMTK++  TL+ T F  + I+PV+A  G           G+ +L++ LT+ + +P
Sbjct: 55498 ASKVAKMTKRVAATLKPTAFANSDILPVSASSG----------DGLSDLVDALTAAVRLP 55349

Query: 217   TRDPS-GPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275
             TR+ +   FL ++DHCF +KGQGTV+TGTI  GS+++G ++E PAL + KKVKSMQMF  
Sbjct: 55348 TRNEAEDAFLFAIDHCFQVKGQGTVVTGTIQRGSVAVGQTIEFPALGLSKKVKSMQMFKA 55169

Query: 276   PITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKF 335
             P+  A+QGDRLGICV Q + KLLERGL CAP ++  V AA++ V +IPYFRG ++++AKF
Sbjct: 55168 PVERAVQGDRLGICVAQLNAKLLERGLACAPGTIRAVSAAVVRVSRIPYFRGEIKSRAKF 54989

Query: 336   HITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVT-----D 390
             H+TVGHETVM  L FF       D   +  + + S      +   + D  P        D
Sbjct: 54988 HLTVGHETVMATLQFFRSVGPGEDPHGLASTASSSSAASSSDAASAADSAPHPAHVFSYD 54809

Query: 391   NDEADKKAGQATEGH-CPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGI 449
             ++  D    +  E +      +A++E E PV C    ++IGSRLD+D+  N CRLAF G 
Sbjct: 54808 DEYLDVSELEGPEAYPTGSTTYAVLELESPVLCAPDAMIIGSRLDSDVDGNVCRLAFSGS 54629

Query: 450   LLHGLEDRNYADSFLP-RLKVYKLKHKHGLVERAMDDYSVIGRSLFKK 496
             L+         DS  P  LK++++K K G + R  ++   I + LF +
Sbjct: 54628 LVAPF------DSDTPWALKIFRVKAKVGHITRLKNEREAICKGLFPR 54503


>gb|GL349438.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.6,
             whole genome shotgun sequence
          Length = 631277

 Score =  121 bits (304), Expect = 1e-27
 Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 15/315 (4%)
 Frame = +3

Query: 7     NVNVGVLGHIDSGKTALARALSTTASTAA---------FDKQPQSRERGITLDLGFSCFS 57
             +VN+G +GH+D GKT+L  A++   +             D+ P+ R+RGIT+        
Sbjct: 38865 HVNIGTIGHVDHGKTSLTAAITKVLAEKGGAQYVDYSNIDRAPEERKRGITIST------ 39026

Query: 58    VPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVI 117
                                A  E        + VDCPGH   ++ +I GA  +D  +LV+
Sbjct: 39027 -------------------AHVEYETDNRHYSHVDCPGHQDFVKNMITGASTMDGAILVV 39149

Query: 118   DVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF 176
               T G   Q+ E +++  Q+  Q LVV +NK+D + + +    ++ +  ++++ L +  +
Sbjct: 39150 SGTDGQMPQTREHVLLARQVGIQDLVVYVNKVDQVDDPEM---LELVEMELRELLTSFGY 39320

Query: 177   RG--APIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSI 234
              G   P +  +A     +         + +L++++ + IS P RD   PFLM ++   SI
Sbjct: 39321 DGDEVPFVFGSALMALEDKDPENGRDSVLKLLDIVDASISEPKRDVDKPFLMPIEDVHSI 39500

Query: 235   KGQGTVMTGTILSGSISLGDSVEIPALKVVKKV--KSMQMFHMPITSAMQGDRLGICVTQ 292
              G+GTV+TG +  G ++ G+ VEI  L    K     ++MFH  +  A  GD LG  +  
Sbjct: 39501 AGRGTVVTGRVEQGVLAKGEDVEILGLGSKSKTVCTGIEMFHKQLDEARAGDNLGALLRG 39680

Query: 293   FDPKLLERG-LVCAP 306
                  + RG ++CAP
Sbjct: 39681 VKRDEIRRGQVLCAP 39725


>gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.28,
              whole genome shotgun sequence
          Length = 422706

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 82/299 (27%), Positives = 142/299 (47%), Gaps = 23/299 (7%)
 Frame = +3

Query: 4      RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSV----- 58
              +R     G +GH+  GK+ L +A+S    T  F  +    ER IT+ LG++   +     
Sbjct: 306189 QRRGARTGTIGHVAHGKSTLVKAISGV-QTVRFKNE---LERNITIKLGYANAKIYKCEN 306356

Query: 59     ---PLPARLRSSLPEFQAAPEAEPEPG-----EPLLQVTLVDCPGHASLIRTIIGGAQII 110
                 P P   RS     + +P     PG     E    V+ VDCPGH  L+ T++ GA ++
Sbjct: 306357 PECPPPGCYRSYKSSHEISPPCR-RPGCGGRMELQRHVSFVDCPGHDILMATMLNGAAVM 306533

Query: 111    DLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQ 168
              D  +L++   +   Q Q++E L   +I   Q ++++ NK+DL+    +Q+  ++  K++Q
Sbjct: 306534 DAALLLVAANESCPQPQTSEHLAAIEIMRLQHILIMQNKVDLI----KQSQAEEQHKQIQ 306701

Query: 169    KTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSV 228
                ++ T   GAP++P++A          +    I  + E + ++I +P RD +   L+ V
Sbjct: 306702 AFVKGTVADGAPVVPISA----------QLKYNIDVVCEYICTRIPVPARDFTSAPLLIV 306851

Query: 229    DHCFSIKG--------QGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITS 279
                 F I          +G V  G+IL G + +GD +E+    +V K    Q+   PI S
Sbjct: 306852 IRSFDINKPGCAVDELKGGVAGGSILKGVLKVGDEIEVRP-GIVSKNAEGQVQVQPILS 307025


>gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.55,
              whole genome shotgun sequence
          Length = 273410

 Score = 96.7 bits (239), Expect = 4e-20
 Identities = 89/365 (24%), Positives = 154/365 (42%), Gaps = 48/365 (13%)
 Frame = +3

Query: 7      NVNVGVLGHIDSGKTALA---------------RALSTTASTAA---------FDKQPQS 42
              +V + ++G IDSGK+  A               R +   A+             D Q   
Sbjct: 153312 HVALSLIGEIDSGKSTTAGNLLVQCGIVPEQSVRKIEREAAEIGRGDFKFAWITDSQAAE 153491

Query: 43     RERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRT 102
              R RG+T+D  F  + +  P R                        +TLVD PGH S ++ 
Sbjct: 153492 RARGVTIDCAF--WKLETPERF-----------------------ITLVDGPGHRSFLKN 153596

Query: 103    IIGGAQIIDLMMLVIDVTKGMQTQSAE--------CLVIGQIACQKLVVVLNKIDLLPEG 154
               + G    DL +LV+D + G    S            V   ++  +LVV +NK+D    G
Sbjct: 153597 AVMGMAQADLALLVVDASPGAFEASISRGGMVRDHLTVAKSMSMTRLVVAINKMDAA--G 153770

Query: 155    KRQAAIDKMTKKMQKTLENTKF--RGAPIIPVAAKPGGPEAPETEAPQ---------GIP 203
                +A   ++  ++++ L  + F  R   ++P+AA  G     E                P
Sbjct: 153771 YDEARFVEVGSELERLLRKSGFSKRSVAMVPIAAFAGVNLCDEARDVMPWYYSGKYGSGP 153950

Query: 204    ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263
               L+  L + ++IP R    PF M++   F + G GTV+ G +LSG I+ GD + +  + +
Sbjct: 153951 TLVAALDA-VAIPVRAVEKPFRMAIAESFVVSGVGTVVGGRVLSGKIAPGDDLVVAPIDM 154127

Query: 264    VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA-----PESLHTVHAALIS 318
                 V+S++M H+ +   + GD +G+ + +     + RG V A     P ++ +  A ++ 
Sbjct: 154128 PTAVRSVEMHHVQLAQGVAGDIVGLHLKKVGVAQVPRGYVVAAASNPPRAVTSFRARIVV 154307

Query: 319    VEKIP 323
              V + P
Sbjct: 154308 VVRHP 154322


>gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.16,
              whole genome shotgun sequence
          Length = 538444

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 83/330 (25%), Positives = 136/330 (41%), Gaps = 36/330 (10%)
 Frame = -1

Query: 12     VLGHIDSGKTAL------------ARALSTTASTAA------------FDKQPQSRERGI 47
              V+GH+DSGK+              AR ++     A              DK    RERGI
Sbjct: 163486 VIGHVDSGKSTTTGHLIYKCGGIDARQIAKFEQEAGEAGKGSFKYAWVLDKLKSERERGI 163307

Query: 48     TLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGA 107
              T+D+               SL +F+               VT++D PGH   I+ +I G 
Sbjct: 163306 TIDI---------------SLWKFETNN----------YYVTVIDAPGHRDFIKNMITGT 163202

Query: 108    QIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKIDLLPEGKRQAA 159
                 D  +LVID T+G          Q+ E  L+   +  ++L+V +NK+D       Q  
Sbjct: 163201 SQADCAVLVIDGTRGGFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDADSVQFSQQR 163022

Query: 160    IDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPELIELLTSQISI 215
               +++  +++  ++   +    +  +P++   G    E     +    P L+E L S I  
Sbjct: 163021 FEEIVAEVKSAIKKVGYNPKKVTFVPISGWTGDNMLEPSSNMSWWTGPTLLEALDS-IKA 162845

Query: 216    PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275
              PTR    P  + V   + I G GTV  G + +G I  G +++      V + KS++M H 
Sbjct: 162844 PTRATERPLRIPVQDVYVIDGLGTVPVGRVEAGVIQPGMAIQFAPSGAVAECKSVEMHHE 162665

Query: 276    PITSAMQGDRLGICVTQFDPKLLERGLVCA 305
               + +   GD +G  V       +ERG V +
Sbjct: 162664 QLEAGNAGDSIGFNVKSLGISDIERGFVAS 162575


>gb|GL349467.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.35,
              whole genome shotgun sequence
          Length = 361230

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 90/365 (24%), Positives = 144/365 (39%), Gaps = 71/365 (19%)
 Frame = +3

Query: 8      VNVGVLGHIDSGKTALA------------RALSTTASTAA------------FDKQPQSR 43
              +NV ++GH+D+GK+ +             RA       AA             D   + R
Sbjct: 302037 LNVVIIGHVDAGKSTMTGRLIYELGGIDERAKEKLEQAAAENNKAGFAFAYFMDTSKEER 302216

Query: 44     ERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTI 103
              ERGIT+D   S F        R++  ++                 ++ D PGHA  I  +
Sbjct: 302217 ERGITIDCQTSSF--------RTTNYDY-----------------SITDAPGHADFITNM 302321

Query: 104    IGGAQIIDLMMLVIDVTKGMQTQSAE---CLVIGQ----------IACQKLVVVLNKIDL 150
              I GA   D+ +L++      +   A+    +  GQ          +  ++LVV +NK+D 
Sbjct: 302322 ITGAGQADVAVLMVPADGNFEASIAKPSGMMAGGQTRQHANLANLLGIKQLVVCVNKMDS 302501

Query: 151    LPEGK-RQAAIDKMTKKMQKTLENTKFRGA--PIIPVAAKPGGPEAPETE---------- 197
                 G   +A  +++  ++ + ++   F  A  PIIPV+   G      TE          
Sbjct: 302502 SEGGAYNEARFNEIRDEVSRMIDEAGFHSATVPIIPVSGWVGDNLTSPTENMPWYNGWSG 302681

Query: 198    --------APQGIP----------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGT 239
                        +G             L+E L + + IP RD +GP  +SV     I GQG 
Sbjct: 302682 RYGYTAKRKKKGFEIVGGTEIKGKTLVEALDNYMRIPDRDANGPLHLSVSGSRLIPGQGL 302861

Query: 240    VMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICV---TQFDPK 296
              V  G I  G+I   D V +    +  K  S+QM H  + + + G  +GI V       PK
Sbjct: 302862 VTMGRIEIGTIRKDDVVALARNGLSGKTFSIQMHHQDVDAGIAGFNVGIVVKFPKGTKPK 303041

Query: 297    LLERG 301
               ++RG
Sbjct: 303042 QVKRG 303056


>gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.18,
              whole genome shotgun sequence
          Length = 527020

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 90/365 (24%), Positives = 144/365 (39%), Gaps = 71/365 (19%)
 Frame = +3

Query: 8      VNVGVLGHIDSGKTALA------------RALSTTASTAA------------FDKQPQSR 43
              +NV ++GH+D+GK+ +             RA       AA             D   + R
Sbjct: 477768 LNVVIIGHVDAGKSTMTGRLIYELGGIDERAKEKLEQAAAENNKAGFAFAYFMDTSKEER 477947

Query: 44     ERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTI 103
              ERGIT+D   S F        R++  ++                 ++ D PGHA  I  +
Sbjct: 477948 ERGITIDCQTSSF--------RTTNYDY-----------------SITDAPGHADFITNM 478052

Query: 104    IGGAQIIDLMMLVIDVTKGMQTQSAE---CLVIGQ----------IACQKLVVVLNKIDL 150
              I GA   D+ +L++      +   A+    +  GQ          +  ++LVV +NK+D 
Sbjct: 478053 ITGAGQADVAVLMVPADGNFEASIAKPSGMMAGGQTRQHANLANLLGIKQLVVCVNKMDS 478232

Query: 151    LPEGK-RQAAIDKMTKKMQKTLENTKFRGA--PIIPVAAKPGGPEAPETE---------- 197
                 G   +A  +++  ++ + ++   F  A  PIIPV+   G      TE          
Sbjct: 478233 SEGGAYNEARFNEIRDEVSRMIDEAGFHSATVPIIPVSGWVGDNLTSPTENMPWYNGWSG 478412

Query: 198    --------APQGIP----------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGT 239
                        +G             L+E L + + IP RD +GP  +SV     I GQG 
Sbjct: 478413 RYGYTAKRKKKGFEIVGGTEIKGKTLVEALDNYMRIPDRDANGPLHLSVSGSRLIPGQGL 478592

Query: 240    VMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICV---TQFDPK 296
              V  G I  G+I   D V +    +  K  S+QM H  + + + G  +GI V       PK
Sbjct: 478593 VTMGRIEIGTIRKDDVVALARNGLSGKTFSIQMHHQDVDAGIAGFNVGIVVKFPKGTKPK 478772

Query: 297    LLERG 301
               ++RG
Sbjct: 478773 QVKRG 478787



 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 90/365 (24%), Positives = 144/365 (39%), Gaps = 71/365 (19%)
 Frame = +2

Query: 8      VNVGVLGHIDSGKTALA------------RALSTTASTAA------------FDKQPQSR 43
              +NV ++GH+D+GK+ +             RA       AA             D   + R
Sbjct: 497834 LNVVIIGHVDAGKSTMTGRLIYELGGIDERAKEKLEQAAAENNKAGFAFAYFMDTSKEER 498013

Query: 44     ERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTI 103
              ERGIT+D   S F        R++  ++                 ++ D PGHA  I  +
Sbjct: 498014 ERGITIDCQTSSF--------RTTNYDY-----------------SITDAPGHADFITNM 498118

Query: 104    IGGAQIIDLMMLVIDVTKGMQTQSAE---CLVIGQ----------IACQKLVVVLNKIDL 150
              I GA   D+ +L++      +   A+    +  GQ          +  ++LVV +NK+D 
Sbjct: 498119 ITGAGQADVAVLMVPADGNFEASIAKPSGMMAGGQTRQHANLANLLGIKQLVVCVNKMDS 498298

Query: 151    LPEGK-RQAAIDKMTKKMQKTLENTKFRGA--PIIPVAAKPGGPEAPETE---------- 197
                 G   +A  +++  ++ + ++   F  A  PIIPV+   G      TE          
Sbjct: 498299 SEGGAYNEARFNEIRDEVSRMIDEAGFHSATVPIIPVSGWVGDNLTSPTENMPWYNGWSG 498478

Query: 198    --------APQGIP----------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGT 239
                        +G             L+E L + + IP RD +GP  +SV     I GQG 
Sbjct: 498479 RYGYTAKRKKKGFEIVGGTEIKGKTLVEALDNYMRIPDRDANGPLHLSVSGSRLIPGQGL 498658

Query: 240    VMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICV---TQFDPK 296
              V  G I  G+I   D V +    +  K  S+QM H  + + + G  +GI V       PK
Sbjct: 498659 VTMGRIEIGTIRKDDVVALARNGLSGKTFSIQMHHQDVDAGIAGFNVGIVVKFPKGTKPK 498838

Query: 297    LLERG 301
               ++RG
Sbjct: 498839 QVKRG 498853



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = +3

Query: 205    LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
              L+E L + + IP RD +GP  +SV     I GQG V  G I  G+I   D V +    + 
Sbjct: 480186 LVEALDNYMRIPDRDANGPLHLSVSGSRLIPGQGLVTMGRIEIGTIRKDDVVALARNGLS 480365

Query: 265    KKVKSMQMFHMPITSAMQGDRLGICV---TQFDPKLLERG 301
               K  S+QM H  + + + G  +GI V       PK ++RG
Sbjct: 480366 GKTFSIQMHHQDVDAGIAGFNVGIVVKFPKGTKPKQVKRG 480485


>gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.2,
              whole genome shotgun sequence
          Length = 680870

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 70/307 (22%), Positives = 116/307 (37%), Gaps = 38/307 (12%)
 Frame = -3

Query: 2      AGRRVNVNVGVLGHIDSGKTALA------------------------RALSTTASTAAFD 37
              A  R  +N+ V+GH+D GK+ L                         +   + A     D
Sbjct: 582456 APSRSPLNLVVVGHVDHGKSTLMGHVLYDMKRVTDKEFHKYERQSAQQGKGSFAFAWVLD 582277

Query: 38     KQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHA 97
                 + R RGIT+D+  +CF  P                            +TL+D PGH 
Sbjct: 582276 AHEEERARGITMDVAVTCFQTPNK-------------------------DITLLDAPGHR 582172

Query: 98     SLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQKLVVVLNKI 148
                +  +I GA   D  +LV+   KG          QT+    L +  +  + +VV +NK+
Sbjct: 582171 DYVPNMITGAAQADAAILVVSAAKGEFEAGFDADGQTKEHTHL-LRSLGVRHIVVAVNKM 581995

Query: 149    DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPG----GPEAPETEAPQGIPE 204
              D +  G      + +   +++ L +  FR  P +P++   G     P         G P 
Sbjct: 581994 DAI--GWDADRFNAIRATLKRFLRSMGFRSVPFVPLSGLEGVNLLEPAPDAMPWYTGAPL 581821

Query: 205    LIELLTSQISIPTRDPSGPFLMSVDHCFS-IKGQGTVMTGTILSGSISLGDSVEIPALKV 263
              L  +    +  P RD   PF M +   +  +   G  + G I +G++ L D V +     
Sbjct: 581820 LATI--DSLPPPARDVDAPFRMPITDAYKPMASSGATVAGKIETGTVRLDDQVLLLPGGE 581647

Query: 264    VKKVKSM 270
              +  VKS+
Sbjct: 581646 IHMVKSI 581626


>gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.63,
             whole genome shotgun sequence
          Length = 205260

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 68/268 (25%), Positives = 106/268 (39%), Gaps = 15/268 (5%)
 Frame = -3

Query: 9     NVGVLGHIDSGKTALARALSTTAS----------TAAFDKQPQSRERGITLDLGFSCFSV 58
             N  +L HID GK+ LA  +                 A D     +ERGIT+         
Sbjct: 52963 NFAILAHIDHGKSTLADRIIDACGGEEGRRRGGREQALDTLEVEQERGITVK-------- 52808

Query: 59    PLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVID 118
                            A  A    G  +L   L+D PGHA     +      +D ++L++D
Sbjct: 52807 ---------------ANSATLRYGGKVLN--LIDTPGHADFGLEVARSLAAVDGVLLLVD 52679

Query: 119   VTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG 178
               +G+Q Q+     +   A   +V VLNKIDL       A ID   + ++ TL       
Sbjct: 52678 AAQGVQAQTLAVARLAAAARLAIVPVLNKIDL-----PAADIDGTLEALEATL-GIDPES 52517

Query: 179   APIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKG-- 236
               I  V+AK G          +G+PEL+++L   I  P+  P  P L  +    +     
Sbjct: 52516 PDICLVSAKTG----------EGVPELLDVLVRAIPPPSPLPLPPHLADLPLAVAFDSRY 52367

Query: 237   ---QGTVMTGTILSGSISLGDSVEIPAL 261
                +G V +  +++G +S G ++   AL
Sbjct: 52366 DTFRGIVASVAVMAGELSAGTALAPLAL 52283


>gb|GL349483.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.51,
              whole genome shotgun sequence
          Length = 286273

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 78/344 (22%), Positives = 147/344 (42%), Gaps = 41/344 (11%)
 Frame = +3

Query: 7      NVNVGVLGHIDSGKTALA------------RALSTTASTA------------AFDKQPQS 42
              +VN+  +GH+D+GK+ ++            R L      A            A D   Q 
Sbjct: 246003 HVNIVFIGHVDAGKSTISGHIMYLTGGLDQRTLDKYEREAKANSRESWKYAWAMDTTEQE 246182

Query: 43     RERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRT 102
              R+RG T+++G + FS                             + T++D PGH + I  
Sbjct: 246183 RDRGKTVEVGRASFSTGSK-------------------------RFTILDAPGHKAYIPH 246287

Query: 103    IIGGAQIIDLMMLVIDVTKG-MQT------QSAECLVIGQIA-CQKLVVVLNKIDLLPEG 154
              +IGGA   D+ +LV+   KG  +T      Q+ E  ++ + A  ++L+VV+NK+D     
Sbjct: 246288 MIGGASQADVGVLVVSSRKGEFETGFDRGGQTREHAMLAKTAGVKQLIVVINKMDDESVN 246467

Query: 155    KRQAAIDKMTKKMQKTLENTKFRGAPII--PVAAKPGGPEAPETEAPQGI------PELI 206
                +    ++ KK++  L+   +  + ++  PV+   G     +   P+G+      P L+
Sbjct: 246468 WSKDRFMEIVKKIKPYLKGVGYSKSDLVFMPVSGLAG--YNLKEPIPEGLCPWYKGPPLL 246641

Query: 207    ELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK 266
               LL  Q+  P R       + +    S +  G V+ G + +G+I+ G ++ +   ++  +
Sbjct: 246642 TLL-EQLRPPQRLMDAALRLPI--ADSYRDMGVVVMGKLEAGTIANGANLVLMPNQMPVE 246812

Query: 267    VKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV-CAPESL 309
              V  + +    +     GD L I +   D   ++ G V C P++L
Sbjct: 246813 VIGLWIDEYEVEVGEPGDNLKIKLKGVDEGDVKNGFVLCEPDNL 246944


>gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.31,
              whole genome shotgun sequence
          Length = 395032

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
 Frame = +1

Query: 9      NVGVLGHIDSGKTALARALSTTA---------STAAFDKQPQSRERGITL-DLGFS-CFS 57
              NV V+ H+D GK+ L  +L   A         ST   D  P  +ERG+T+   G + C+ 
Sbjct: 145762 NVTVVAHVDHGKSTLTDSLLAGAGLLASAKAGSTCEMDTLPDEKERGVTIKSTGITLCYD 145941

Query: 58     VPLPARLRS--SLPEFQAAP---------EAEPEPGEPL-LQVTLVDCPGHASLIRTIIG 105
              VP+P  + S  S     AA          +A   PG  +   + ++D PGH      +  
Sbjct: 145942 VPVPDFVPSAGSFDSGDAASAGASAGAQADATVAPGNAMPFVINVIDSPGHIDFSAEVTA 146121

Query: 106    GAQIIDLMMLVIDVTKGMQTQSAECL--VIGQIACQKLVVVLNKID 149
                ++ D  ++V+D  +G + Q+   L   +G++  +  V+ +NK+D
Sbjct: 146122 SLRLTDGAIVVVDCVEGPRVQTKMVLRQALGELV-KPAVLCINKVD 146256


>gb|GL349461.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.29,
              whole genome shotgun sequence
          Length = 406166

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 67/324 (20%), Positives = 132/324 (40%), Gaps = 29/324 (8%)
 Frame = +2

Query: 8      VNVGVLGHIDSGKTALARALSTT-------ASTAAFDKQPQSRERGITLDLGFSCFSVPL 60
              + V V+G++DSGK+ L   L+         A+ +   +     E G T  +         
Sbjct: 111491 IRVAVVGNVDSGKSTLLGVLTRGKLDDGRGAARSCVFRHSHEIESGRTSSISQEILGYDA 111670

Query: 61     PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIID--LMMLVID 118
               A + +    F+  P            +T +D  GH   ++T + G   ++    M+++ 
Sbjct: 111671 GAEIVNYT--FERTPSWSAICVASSKVITFLDLAGHERYLKTTLFGLTGMNPSYAMMMVG 111844

Query: 119    VTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG 178
                 G+   + E + I       + +V+ KID+ P       + +  +++ K +++   R 
Sbjct: 111845 ANAGVIGMTKEHMSIALALKVPVYMVVTKIDMAPPN----VLKRTLRQLSKLVKSPGARK 112012

Query: 179    APIIP-------VAAKPGGPE--APETEAPQGIPELIELLTSQISI-PTRDP-----SGP 223
               PI+        VAA+        P         E ++LL + I++ P R         P
Sbjct: 112013 VPIVVKTMDDVVVAARSFLMHRICPIFLVSNVTGENLDLLRAFINLLPARTEWSQLTEAP 112192

Query: 224    FLMSVDHCFSIKGQGTVMTGTILSGSISLGDSV-----EIPALKVVKKVKSMQMFHMPIT 278
                + +D  FS+ G G V++GT+LSG ++ GDS+        A + V  +KS+++   P  
Sbjct: 112193 AEVCIDDTFSVPGVGCVVSGTVLSGGVTAGDSLLLGPNAFGAFEPV-TIKSIEVRRHPTK 112369

Query: 279    SAMQGDRLGICVTQFDPKLLERGL 302
              +   G      + +     + +G+
Sbjct: 112370 AVTAGRSASFALKKIKRSAIRKGM 112441


>gb|GL349465.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.33,
              whole genome shotgun sequence
          Length = 407772

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
 Frame = +2

Query: 88     VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
              +T+VD PGHA+           +D M+LV+D T+GM  Q+ E L    +    + VV NK
Sbjct: 299768 LTVVDTPGHAAFFHMREHSVLALDAMVLVVDATQGMGEQTLEVLTAAAVEKLPVFVVANK 299947

Query: 148    IDLLPEGK-RQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP-QGIPEL 205
              +D+L  G+  + AI  +  ++                 A +P  P  P+ + P    P  
Sbjct: 299948 MDMLGSGEAARGAIAGLLDQLH----------------AFEPFAP-LPDADTPLPPAPGS 300076

Query: 206    IELLTSQISI----PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL 261
              +++L  Q+SI    P    +G  L S+    +   +G     T  S    +   V+  A+
Sbjct: 300077 LDVLNPQLSIAGVYPVSAKTGGGLRSLVGDLAAFAEGAAAPETASSADAEVNAVVQASAV 300256

Query: 262    KVV 264
               VV
Sbjct: 300257 GVV 300265


>gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.61,
             whole genome shotgun sequence
          Length = 239416

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
 Frame = +2

Query: 9     NVGVLGHIDSGKTALARALSTTASTAA---------FDKQPQSRERGITLDLGFSCFSVP 59
             NV +L H+D GKT L+ +L  T    +          D  P+ + RGIT+          
Sbjct: 80921 NVCILAHVDHGKTTLSDSLIATNQIISSRLVGEVRYMDSTPEEQARGITMK--------- 81073

Query: 60    LPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV 119
               A   S L  F      +P+P      + L+D PGH    + +    +  D  ++++DV
Sbjct: 81074 --ASAISLLHGFMPKEADKPQPH----LINLIDSPGHLDFAQEVSTAVRNCDGALVLVDV 81235

Query: 120   TKGMQTQSAECLVIGQIACQKLVVVLNKIDLL 151
              +G+  Q+   L          ++V NKID L
Sbjct: 81236 LEGVSKQTHGVLEQAWREQLTPILVFNKIDRL 81331


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,746,631
Number of Sequences: 131
Number of extensions: 432916
Number of successful extensions: 3751
Number of sequences better than 1.0e-05: 14
Number of HSP's better than  0.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2988
Number of HSP's gapped (non-prelim): 1753
length of query: 596
length of database: 9,560,209
effective HSP length: 105
effective length of query: 491
effective length of database: 9,546,454
effective search space: 4687308914
effective search space used: 4687308914
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)