genewise output
Score 294.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000038_1.0    6 VNVNVGVLGHI                          SGKTALARALST 
                     VNVNVG+LGH+                          SGKT+L R+LST 
                     VNVNVGILGHV          D:D[gac]        SGKTSLVRSLST 
gi|288565299|g-25753 gagaggatgcgGGTACGTC  Intron 1   TAGACagaaacgctcaa 
                     tatatgttgat <1-----[25719:25670]-1>  ggacgttgctgc 
                     cccccgcgctg                          cgggcccctgcg 


SPP00000038_1.0   30 TASTAAFDKQPQSRER                          ITLDLGF 
                       STAA+DK PQS+ R                          ITLDLGF 
                     HLSTAALDKNPQSKAR          G:G[ggc]        ITLDLGF 
gi|288565299|g-25631 cctaggcgaaccaagcGGTACCCT  Intron 2   TAGGCaacgcgt 
                     atcccctaaacagacg <1-----[25582:25533]-1>  tctatgt 
                     ccggcgccgcggcgcc                          cggcccc 


SPP00000038_1.0   54 SCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRT 
                     S + +P  A          A+ EA         Q+TLVDCPGHASLI+T 
                     SSLQLPFTA----------ASGEAY------TAQLTLVDCPGHASLIKT 
gi|288565299|g-25509 ttcccctag          gagggt      agccacggtcgcgtcaaa 
                     cctatctcc          cggaca      ccatcttagcgaccttac 
                     ggggaccag          accggc      aggcggcccgccggccag 


SPP00000038_1.0  103 IIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLL 
                     +IGGA IID+ +LVID  KG+Q Q+ E  V+ +IA   ++VVLNK+DLL 
                     VIGGAHIIDMALLVIDAVKGIQMQTIESTVLAEIATSHVIVVLNKVDLL 
gi|288565299|g-25410 gagggcaagagccgagggagacacaagtagcggagatcgaggcaaggcc 
                     ttggcattatcttttactagtatactaccttcatcccatttttaatatt 
                     ctcccccccggtcccccggctggggcggcggcgtaggtgtcgccgccgc 


SPP00000038_1.0  152 PEGKRQAAIDKMTKKMQKTLENT-KFRGAPIIPVAAKPGGPEAPETEAP 
                      +   Q  +  M   ++  L ++  ++  PI+PVAA     +A    AP 
                     TDKATQ--LPAMLATIRTFLSSSPTLQDCPIVPVAA----GDADGARAP 
gi|288565299|g-25263 agagac  ccgacgaacatttttcaccgtcagcggg    ggggggcgc 
                     caacca  tccttcctgcttccccctaagcttctcc    gacagcgcc 
                     gcgggg  gcgggcgccccggggaggaccgtgtgtc    ctcccccgg 


SPP00000038_1.0  200 QGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGT     
                     QG+P+L+  +   + +PTR   GP+  ++DHCF ++G+GTV+TGT     
                     QGMPDLLATMQRHLHLPTRSGDGPLCYAIDHCFPLRGKGTVLTGT     
gi|288565299|g-25134 cgacgccgaacccccccactgggccttgagcttcccgagagcaga     
                     agtcattcctagatatccgcgagctgactaagtctggagcttcgc     
                     gcggcccgggaccgcgggtgtccgcccccccctgggcaccgctct     


SPP00000038_1.0  245                           LSGSISLGDSVEIPALKVVKKVK 
                                               LSG++ + D++ IP L   KKVK 
                               I:V[gtc]        LSGTVRVNDTIAIPILGTEKKVK 
gi|288565299|g-24999 GGTACGCT  Intron 3   TAGTCttgagcgagaagacacgagaaga 
                      <1-----[24998:24956]-1>  tcgctgtaactctcttgcaaata 
                                               agcgcacctgcgcgtcccaggcg 


SPP00000038_1.0  269 SMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALI 
                     S+QMFH  +  A+QGDR+G+ +  +D   LERGL   P+SL  V   ++ 
                     SLQMFHTSVEKAIQGDRVGLRLHGLDAATLERGLAITPKSLSFVLNLVL 
gi|288565299|g-24884 tccatcaaggagacggcggccccgcgggacgcgcgaacatcatgcacgc 
                     ctattacgtaactagagtgtgtagtaccctaggtctccactgtttattt 
                     gcggccgccggccaccccccggccctcgccgccctcgcggcctccccga 


SPP00000038_1.0  318 SVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDS 
                      V ++ +F    ++ AK H+TVGH TV+ +  FF  +  +F  E      
                     QVHRVRFFGLDCESGAKVHVTVGHSTVLAKATFFHGSHASFAVE----- 
gi|288565299|g-24737 cgccgcttgcgtgaggagcgaggcaagcgagattcgtcgatggg      
                     atagtgttgtagaggcatatctgagcttcaccttagcacgtcta      
                     agtcatctccccgctcggcgccgcccggcacccccggccctgcg      


SPP00000038_1.0  367 FNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVE 
                          EY     YL+  L  + TD+                   + L++ 
                     ---NTEY----RYLA-TLPASATDH------------------LFVLLQ 
gi|288565299|g-24605    aagt    ctcg accgagagc                  ctgttc 
                        acaa    gatc ctccgccaa                  ttttta 
                        ccgc    gcgg gagccccct                  atgggg 


SPP00000038_1.0  416 FEKPVTCPRLCLVIGSRLDADI-HTNTCRLAFHGILLHGLED------- 
                     +E+ +  P    VI SRLD  +  +N CR+AF+G ++  L++        
                     LEREILVPPFSHVICSRLDTTVSQSNVCRIAFYGPVVATLDNVLLCGPD 
gi|288565299|g-24536 cgcgacgcctacgattccgaagtctagtcagttgcgggacgagcctgcg 
                     tagatttcctgattgcgtacctcacatggtctagcttcctaatttggca 
                     cgcgtcgagcccctcgcccgcggggcgtccgtcccccgctccaacttgt 


SPP00000038_1.0  457 -----RNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNI 
                          R+Y  S  P L + K+K +HGLVE+  +    I + LF+KETN+ 
                     CLVFIRHYVHS-CP!LHIGKIKERHGLVEKCGEHGVAIVKDLFRKETNL 
gi|288565299|g-24389 tcgtacctgca tc2ccagaaagccgcggatggcgggagagctcagaac 
                     gttttgaatag gc tatgataagagttaaggaagtcttaattgaacat 
                     ttgtaactgtt ta gcccacggcttccagccgcctgccgtctaagccc 


SPP00000038_1.0  501 QLFVGLKVHLSTGE-LGIIDSAFGQSGKFKIHIPGG              
                      +F GL V       LG ID AFG++GK ++ +  G              
                     DIFKGLTVQNERSRALGAIDGAFGKTGKCRVQFTDG              
gi|288565299|g-24246 gatagcagcagctcgcggagggtgaagatcgctagg              
                     attagtctaaagcgctgctagctgacgaggtatcag              
                     cccgtacggcgggccccccccgtcggcgcgtgtgca              


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
>gi|288565299|gb|GG743898.1|:subseq(220735,50533).pep
VNVNVGILGHVDSGKTSLVRSLSTHLSTAALDKNPQSKARGITLDLGFSSLQLPFTAASG
EAYTAQLTLVDCPGHASLIKTVIGGAHIIDMALLVIDAVKGIQMQTIESTVLAEIATSHV
IVVLNKVDLLTDKATQLPAMLATIRTFLSSSPTLQDCPIVPVAAGDADGARAPQGMPDLL
ATMQRHLHLPTRSGDGPLCYAIDHCFPLRGKGTVLTGTVLSGTVRVNDTIAIPILGTEKK
VKSLQMFHTSVEKAIQGDRVGLRLHGLDAATLERGLAITPKSLSFVLNLVLQVHRVRFFG
LDCESGAKVHVTVGHSTVLAKATFFHGSHASFAVENTEYRYLATLPASATDHLFVLLQLE
REILVPPFSHVICSRLDTTVSQSNVCRIAFYGPVVATLDNVLLCGPDCLVFIRHYVHSCP
XLHIGKIKERHGLVEKCGEHGVAIVKDLFRKETNLDIFKGLTVQNERSRALGAIDGAFGK
TGKCRVQFTDG
//
>gi|288565299|gb|GG743898.1|:subseq(220735,50533).[25753:24349].sp
GTCAACGTCAACGTCGGGATCTTGGGCCATGTGGACAGCGGGAAGACGAGCCTCGTCCGC
TCTCTGAGCACGCACCTCTCGACGGCCGCGCTCGACAAGAACCCGCAGAGCAAGGCCCGC
GGCATCACGCTGGACCTCGGCTTCTCGTCGCTGCAGCTACCCTTCACAGCGGCAAGCGGC
GAGGCGTACACAGCGCAGCTCACGCTGGTCGACTGCCCGGGCCACGCGTCGCTCATCAAA
ACGGTCATTGGCGGCGCCCACATCATCGACATGGCGCTTCTCGTCATCGACGCCGTGAAG
GGCATTCAGATGCAGACGATCGAGTCGACCGTGCTGGCCGAGATTGCAACGTCGCATGTG
ATTGTCGTGCTCAACAAGGTCGACCTGCTCACGGACAAGGCGACGCAGCTGCCCGCGATG
CTGGCCACGATCCGCACCTTCTTGTCGTCGTCGCCAACGCTGCAAGACTGCCCGATTGTG
CCTGTGGCTGCCGGCGATGCCGACGGCGCCCGCGCGCCGCAGGGCATGCCGGACCTCCTC
GCGACGATGCAACGCCACCTGCACCTGCCGACGCGTTCGGGTGACGGCCCGCTCTGCTAC
GCCATCGACCACTGCTTTCCGCTGCGGGGCAAAGGCACCGTGCTCACTGGCACTGTCTTA
TCGGGCACGGTCCGAGTCAACGATACGATCGCGATCCCGATTCTCGGCACCGAAAAGAAG
GTCAAGTCGCTCCAGATGTTCCACACGAGCGTCGAGAAGGCCATCCAAGGCGACCGCGTC
GGCCTCCGGCTGCACGGCCTCGATGCCGCGACCCTCGAGCGCGGCCTCGCTATCACGCCC
AAGTCGCTCAGCTTTGTCCTCAACCTCGTGCTACAAGTGCATCGCGTACGTTTCTTTGGC
CTCGACTGCGAGAGCGGTGCCAAGGTGCACGTGACCGTCGGGCACAGCACCGTGCTGGCC
AAAGCCACCTTCTTCCACGGGTCGCACGCCAGCTTTGCGGTCGAGAACACCGAGTACCGG
TACCTGGCGACGCTACCGGCCAGCGCCACCGACCATCTATTTGTGTTGTTGCAGCTCGAG
CGCGAGATTCTCGTGCCACCGTTCAGCCACGTCATTTGCTCGCGCCTCGACACGACCGTG
TCGCAGTCGAACGTGTGTCGCATCGCGTTTTACGGCCCCGTCGTCGCGACCCTTGACAAC
GTACTACTCTGTGGTCCGGATTGTCTTGTGTTTATACGACACTATGTGCATAGTTGTCCA
>gi|288565299|gb|GG743898.1|:subseq(220735,50533).[24348:24137].sp
CTGCACATCGGCAAAATCAAGGAGCGCCATGGTCTCGTCGAAAAGTGCGGCGAGCACGGC
GTTGCGATCGTCAAGGATCTCTTTCGAAAAGAGACCAACCTCGACATCTTCAAGGGTCTA
ACCGTGCAGAACGAGCGGTCGCGCGCCCTCGGCGCCATCGACGGCGCGTTTGGCAAGACG
GGCAAGTGCCGGGTTCAGTTTACGGACGGA
//
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	match	25753	24351	293.36	-	.	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	cds	25753	25720	0.00	-	0	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	intron	25719	25670	0.00	-	.	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	cds	25669	25583	0.00	-	2	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	intron	25582	25533	0.00	-	.	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	cds	25532	24999	0.00	-	2	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	intron	24998	24956	0.00	-	.	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	cds	24955	24351	0.00	-	2	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-1
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	match	24348	24139	56.93	-	.	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-2
gi|288565299|gb|GG743898.1|:subseq(220735,50533)	GeneWise	cds	24348	24139	0.00	-	0	gi|288565299|gb|GG743898.1|:subseq(220735,50533)-genewise-prediction-2
//