TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    84   2e-15
emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genom...    80   3e-14

>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 83.6 bits (205), Expect = 2e-15
 Identities = 39/61 (63%), Positives = 50/61 (81%), Gaps = 3/61 (4%)
 Frame = +1

Query: 91       VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQK---LVVVLNK 147
                VDCPGHASLIRTIIGGAQI+D+M+LV+D TKG+Q Q+ EC+VIG+        ++VVLNK
Sbjct: 17111767 VDCPGHASLIRTIIGGAQIMDMMLLVVDATKGIQAQTTECVVIGEAVMSSGADVIVVLNK 17111946

Query: 148      I 148
                +
Sbjct: 17111947 V 17111949



 Score = 58.2 bits (139), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 32/38 (84%)
 Frame = +2

Query: 6        VNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSR 43
                +N+NVG+LGH+DSGKT+L +ALST  STA+ DK PQ R
Sbjct: 17110598 LNINVGILGHVDSGKTSLVKALSTVLSTASLDKNPQVR 17110711



 Score = 55.5 bits (132), Expect = 7e-07
 Identities = 25/66 (37%), Positives = 41/66 (62%)
 Frame = +2

Query: 187      KPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTIL 246
                +P    + ET A  GI  +   L+ +  +P+R  S P   + DHCFS++GQGT++TGT+L
Sbjct: 17112761 RPPSSCSEETSA-MGIDTVAGELSRRARVPSRRASAPLYFAFDHCFSVRGQGTILTGTVL 17112937

Query: 247      SGSISL 252
                +G + +
Sbjct: 17112938 TGEVKV 17112955


>emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG11
          Length = 5521395

 Score = 79.7 bits (195), Expect = 3e-14
 Identities = 78/337 (23%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
 Frame = +1

Query: 5       RVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------FDKQP 40
               ++++N+ V+GH+D+GK+               R +      AA             D   
Sbjct: 2322616 QIHINLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKSSFKYAWVLDNLK 2322795

Query: 41      QSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLI 100
                 RERGIT+D+    F                           P    T++D PGH   I
Sbjct: 2322796 AERERGITIDIALWKFE-------------------------SPKYNFTVIDAPGHRDFI 2322900

Query: 101     RTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLL 151
               + +I G    D+ +LV+          ++K  QT+    L+   +  ++++V +NK+D  
Sbjct: 2322901 KNMITGTSQADVAVLVVASGVGEFEAGISKNGQTRE-HALLAFTLGVKQMIVCINKMDDS 2323077

Query: 152     PEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPVAAKPGGPEAPE-TEAP--QGIPELI 206
                    +    ++ +++   L+   ++ A  P +P++   G     + T  P  +G P L+
Sbjct: 2323078 SVMYGEPRYTEIKEEVAIYLKKVGYKPAKIPFVPISGWAGDNMIDKSTNMPWYKG-PYLL 2323254

Query: 207     ELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK 266
               E L + +  PTR    P  + +   + I G GTV  G + +G +  G  V      +  +
Sbjct: 2323255 EALDT-MKEPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGCLKPGMVVTFAPCMLDTE 2323431

Query: 267     VKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303
               VKS++M H  +  A+ GD +G  V     K + RG V
Sbjct: 2323432 VKSVEMHHEALPEAVPGDNVGFNVKNVSVKDIRRGYV 2323542



 Score = 79.7 bits (195), Expect = 3e-14
 Identities = 78/337 (23%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
 Frame = -2

Query: 5       RVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------FDKQP 40
               ++++N+ V+GH+D+GK+               R +      AA             D   
Sbjct: 2318564 QIHINLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKSSFKYAWVLDNLK 2318385

Query: 41      QSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLI 100
                 RERGIT+D+    F                           P    T++D PGH   I
Sbjct: 2318384 AERERGITIDIALWKFE-------------------------SPKYNFTVIDAPGHRDFI 2318280

Query: 101     RTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLL 151
               + +I G    D+ +LV+          ++K  QT+    L+   +  ++++V +NK+D  
Sbjct: 2318279 KNMITGTSQADVAVLVVASGVGEFEAGISKNGQTRE-HALLAFTLGVKQMIVCINKMDDS 2318103

Query: 152     PEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPVAAKPGGPEAPE-TEAP--QGIPELI 206
                    +    ++ +++   L+   ++ A  P +P++   G     + T  P  +G P L+
Sbjct: 2318102 SVMYGEPRYTEIKEEVAIYLKKVGYKPAKIPFVPISGWAGDNMIDKSTNMPWYKG-PYLL 2317926

Query: 207     ELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK 266
               E L + +  PTR    P  + +   + I G GTV  G + +G +  G  V      +  +
Sbjct: 2317925 EALDT-MKEPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGCLKPGMVVTFAPCMLDTE 2317749

Query: 267     VKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303
               VKS++M H  +  A+ GD +G  V     K + RG V
Sbjct: 2317748 VKSVEMHHEALPEAVPGDNVGFNVKNVSVKDIRRGYV 2317638


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,449,713
Number of Sequences: 35
Number of extensions: 2496123
Number of successful extensions: 13533
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11813
Number of HSP's gapped (non-prelim): 5510
length of query: 596
length of database: 65,311,373
effective HSP length: 119
effective length of query: 477
effective length of database: 65,307,208
effective search space: 31151538216
effective search space used: 31151538216
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)