TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.5 of Capsaspora owczarzaki ATCC 30864                   258   8e-69
supercontig_1.2 of Capsaspora owczarzaki ATCC 30864                   119   4e-27
supercontig_1.16 of Capsaspora owczarzaki ATCC 30864                   75   2e-13
supercontig_1.3 of Capsaspora owczarzaki ATCC 30864                    59   9e-09
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    56   6e-08
supercontig_1.17 of Capsaspora owczarzaki ATCC 30864                   55   2e-07
supercontig_1.15 of Capsaspora owczarzaki ATCC 30864                   54   4e-07

>supercontig_1.5 of Capsaspora owczarzaki ATCC 30864
          Length = 1755934

 Score =  258 bits (659), Expect = 8e-69
 Identities = 220/754 (29%), Positives = 318/754 (42%), Gaps = 244/754 (32%)
 Frame = -3

Query: 86    LQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE---------------- 129
             LQ TLVDCPGHA LIRTIIGGAQIID+MMLV+DV KG+QTQ+AE                
Sbjct: 67784 LQFTLVDCPGHADLIRTIIGGAQIIDMMMLVVDVNKGIQTQTAEVRTHNLSLSGFARMLL 67605

Query: 130   --------------CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDK------------- 162
                           CLVIG+I C  LVV LNKID +PE +R   I+K             
Sbjct: 67604 TLARNPPPSSRLAQCLVIGEIMCDILVVALNKIDQIPEDQRAQTIEKARLA*NERSSFLC 67425

Query: 163   -------------------MTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIP 203
                                +T+ + KT   TKF    +IPVAA+P       T    G+ 
Sbjct: 67424 SLLTWGGGFRAVPTTVWMQVTRGLAKTFATTKFGQVAVIPVAARPA------TGPAIGVE 67263

Query: 204   ELIELL-TSQISIPTRDPSGPFLMSVDHCFS----------------------------- 233
              LI+++    +++ +R        S   C+                              
Sbjct: 67262 NLIQVVQVEAVAVASRLKLKSCASSTGRCWPSQCLGNVTIPRHRSSLLSTTALLSRAKAP 67083

Query: 234   -------------IKGQGTVMTGTILSGS--------ISLG-DSVEIPALKVVKKVKSMQ 271
                          ++ +GTV+    L+ +        +  G  ++EIP  K+ +K+KS+Q
Sbjct: 67082 S*LALLFPARSK*MR*KGTVLVFKYLTSTKNEIVVWVVLFGFQNIEIPTAKLSRKIKSIQ 66903

Query: 272   MFHMPI---------------------------------------TSAMQGDRLGICVTQ 292
             MFH P+                                        +  QGDR GICVTQ
Sbjct: 66902 MFHRPVQQITAVKEASDSKGRS*TFGLFFFFCFFVFVSCNQKADLLAKTQGDRAGICVTQ 66723

Query: 293   FDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFS 352
             FD   LERG  CA  ++   HA +  V+K+ +F+ P+ +K++FH       + G +    
Sbjct: 66722 FDASTLERGYACAAGAVIFAHALIARVDKVRFFKLPVLSKSRFHGRRASLKLTGGVCGLI 66543

Query: 353   PAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLT---------------PAVTDND----- 392
              +     Q P +    + + +        K ++                A  D +     
Sbjct: 66542 *SSGAPAQCPWVTKL*WERPHSLHAVSKQKSVSGEAAWPF*PFYSCVVRASLDGEGNARF 66363

Query: 393   EADKKAGQATEGHCPRQQ--------------WALVEFEKPVTCPRLCLVIGSR--LDAD 436
             E DK+   A E   P Q+              +AL+E + PV C    L+IGSR  LD D
Sbjct: 66362 EVDKEYAFAEELGRPPQENASNSGQPPAPLATFALIELDHPVACLSNALLIGSRLDLDPD 66183

Query: 437   IHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERA-------------- 482
             +HT  CRLAF G +   L D++Y ++FLP+LKV+K K + G VER               
Sbjct: 66182 VHTKACRLAFSGRVHEALTDKSYRETFLPKLKVFKRKSRTGTVERVRAPRVLVLPMGVFP 66003

Query: 483   --------------------MDDYSVIGRSLFKKETNIQLFVGLKVHLST---------- 512
                                 +DDY++IG+ LFKKET ++ F+GL+V LS+          
Sbjct: 66002 HSQFAVLMPVLFCATTQTQILDDYTLIGKGLFKKETTLEPFLGLQVGLSSGKQVELETSV 65823

Query: 513   -----------GELGIIDSAFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGRGEATR 561
                        GE+G I+ AFGQSGKF++ +   +S  +K  L  + K +   G+G+A  
Sbjct: 65822 ACRSDSKASPAGEVGEIEGAFGQSGKFRVRMRQAVSDATKATLAASDKPK---GKGKAPA 65652

Query: 562   QEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQS 595
              E  A        + + L+FKRYV+D  KRM+QS
Sbjct: 65651 PEAEA--------IEIVLSFKRYVYDRQKRMIQS 65574



 Score = 59.3 bits (142), Expect(2) = 3e-14
 Identities = 32/44 (72%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
 Frame = -2

Query: 22    ALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSV-PLPARL 64
             A A+ALST ASTAAFDK PQS+ RGITLDLGFS  SV P+P  L
Sbjct: 68058 APAKALSTVASTAAFDKNPQSQARGITLDLGFSSLSVTPMPEHL 67927



 Score = 37.7 bits (86), Expect(2) = 3e-14
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -1

Query: 4     RRVNVNVGVLGHIDSGKTAL 23
             R +NVN+GVLGHIDSGKTAL
Sbjct: 68206 RVLNVNLGVLGHIDSGKTAL 68147


>supercontig_1.2 of Capsaspora owczarzaki ATCC 30864
          Length = 2668053

 Score =  119 bits (299), Expect = 4e-27
 Identities = 106/349 (30%), Positives = 160/349 (45%), Gaps = 48/349 (13%)
 Frame = +2

Query: 9       NVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSC------------- 55
               N+G +GH+D GKT+L     T A T   + +  +R R       F C             
Sbjct: 2000249 NIGTIGHVDHGKTSL-----TAAITKGKE*RR*TRRR-------FGCMVCLVVLGRRPSH 2000392

Query: 56      -----FSVPLPARLRSSL-------PEFQAAPEAEPEPGEPLLQVTL------------- 90
                    F  P P  L   L        +++A  + +  P E    +T+             
Sbjct: 2000393 SQIFPFPPPAPVILLPHLVLAETGQAKYKAYGDIDNAPEEKARGITIATAHVEYETAKRH 2000572

Query: 91      ---VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLN 146
                  VDCPGHA  I+ +I GA  +D  +LV+  T G   Q+ E L++  Q+  + LVV +N
Sbjct: 2000573 YGHVDCPGHADYIKNMITGAAQMDGAILVVAGTDGQMPQTREHLLLAKQVGVKALVVYIN 2000752

Query: 147     KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVAAKPGGPEAPETEAPQGIPE 204
               K D + E K Q  + +M  +M++ L   KF G   PII  +A     +       Q I +
Sbjct: 2000753 KADAVAE-KDQLELVEM--EMREILNEYKFDGDNTPIIIGSALCALEDREPELGRQSILK 2000923

Query: 205     LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL--- 261
               L++ + + I  P+RD   PFLMS++  FSI G+GTV TG +  G ++ GD VEI      
Sbjct: 2000924 LLDAVDNFIPQPSRDLDKPFLMSIEDVFSIGGRGTVATGRVERGIVNKGDEVEIVGFGTT 2001103

Query: 262     KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG-LVCAPESL 309
                +   V  ++MFH  +     GD LG  +     + L RG ++CAP +L
Sbjct: 2001104 PIKTTVTGLEMFHKQLERGEAGDNLGALLRGVKREDLRRGHMICAPGTL 2001250


>supercontig_1.16 of Capsaspora owczarzaki ATCC 30864
          Length = 797998

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 84/352 (23%), Positives = 140/352 (39%), Gaps = 49/352 (13%)
 Frame = -3

Query: 1      MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTA------------AF 36
              M   + ++N+ V+GH+DSGK+               R +      A              
Sbjct: 232784 MGKEKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232605

Query: 37     DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
              DK    RERGIT+D+               +L +F+ +             VT++D PGH
Sbjct: 232604 DKLKAERERGITIDI---------------ALWKFETSK----------FYVTIIDAPGH 232500

Query: 97     ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
                 I+ +I G    D  +L++          ++K  QT+    L+   +  ++L+V +NK
Sbjct: 232499 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKDGQTRE-HALLAYTLGVKQLIVGINK 232323

Query: 148    IDLL--PEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGP--EAPET------- 196
              +D +   E +    + +++  ++K   + K      +P++   G    EA E        
Sbjct: 232322 MDSIKFAEERYNEIVTEVSNYIKKIGYDPK--TVAFVPISGWHGDNMLEASENMPWFKGW 232149

Query: 197    -----EAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251
                   E       LIE L + IS P R    P  + +   + I G GTV  G + +G + 
Sbjct: 232148 TIERKEGNASGKTLIEALDA-ISPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 231972

Query: 252    LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303
               G  V      V  +VKS++M H  +  A  GD +G  V     K + RG V
Sbjct: 231971 PGMVVTFAPSNVTTEVKSVEMHHESLPEANPGDNVGFNVKNVAVKDIRRGNV 231816


>supercontig_1.3 of Capsaspora owczarzaki ATCC 30864
          Length = 2526540

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 8/256 (3%)
 Frame = +3

Query: 9      NVGVLGHIDSGKTALARALSTTASTA--------AFDKQPQSRERGITLDLGFSCFSVPL 60
              N  ++ HID GK+ LA  L     T           DK    RERGIT+           
Sbjct: 102222 NFSIVAHIDHGKSTLADRLLEVTGTIERNKDNKQVLDKLQVERERGITV----------- 102368

Query: 61     PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVT 120
                       + Q+        GE  L + L+D PGH      +          +L++D  
Sbjct: 102369 ---------KAQSVSMFYKNKGETYL-INLIDTPGHVDFSYEVSRSLYACQGCILLVDAA 102518

Query: 121    KGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAP 180
              +G+Q Q+    ++   +   +V VLNKIDLL      A   ++TK+MQ            
Sbjct: 102519 QGIQAQTVANFMLAFDSNLSIVPVLNKIDLL-----HADAARVTKQMQSVF--------- 102656

Query: 181    IIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTV 240
                    +P        +   GI +++  +  ++  P+ +P  P  + +   +    +G V
Sbjct: 102657 ----GTEPEEALRISAKTNLGIDQVLPAIIDRVPPPSGNPDAPPKVLLFDSWYDDFRGVV 102824

Query: 241    MTGTILSGSISLGDSV 256
                  ++ GS+ +G+ +
Sbjct: 102825 CLIAVVDGSLKVGEKI 102872



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 5/249 (2%)
 Frame = +3

Query: 10      VGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLP 69
               V ++GH+D GKT L  +L  T+  A           GIT  +G   F VPL         
Sbjct: 1859454 VTIMGHVDHGKTTLLDSLRKTSVAA-------GEAGGITQHIG--AFKVPL--------- 1859579

Query: 70      EFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE 129
                        P  G      T +D PGHA+       GA+  D+++LV+    G+  Q+ E
Sbjct: 1859580 ---------PNGG----AATFLDTPGHAAFSAMRSRGARATDIVILVVAADDGVMPQTVE 1859720

Query: 130     CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPG 189
                +   + +   ++V + K D +P    +    ++ K                + V A  G
Sbjct: 1859721 SIEHIRASRAPMIVAVTKCD-MPMSNPKNVYQQLLKHG--------------VHVEALGG 1859855

Query: 190     GPEAPETEAPQGIP-----ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGT 244
                 ++ E  AP+G+      E I  LT QI+ P  +  GP           +G G V+T  
Sbjct: 1859856 SVQSVELAAPKGLGLSDLIENIAALTEQIA-PEAEQDGPAEAIAIESKQREGMGMVVTCL 1860032

Query: 245     ILSGSISLG 253
               +  G +  G
Sbjct: 1860033 VTQGILREG 1860059


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
 Frame = -1

Query: 12      VLGHIDSGKTALARALSTTASTAAFDKQPQSRERG-ITLDLGFSCFSVPLPARLRSSLPE 70
               VLGH+D+GKT L   +  T          QS E G IT  +G S F +         L E
Sbjct: 3383397 VLGHVDTGKTKLLDKIRHT--------NVQSGEAGGITQQIGASYFPMSTIEDQTKRLKE 3383242

Query: 71      FQAAPEAEPE-PGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE 129
                + +   + + PG     + ++D PGH S       G+ + D+ +LV+D+  G++ Q+ E
Sbjct: 3383241 LKDSVVTDIKVPG-----LLIIDTPGHESFSNLRSRGSSLCDIAILVVDIMHGLEPQTIE 3383077

Query: 130     CLVIGQIACQKLVVVLNKIDLL------PEG--------KRQAAIDKMTKKMQKTL---- 171
                + + +      VV LNK+D +      P+         ++Q+A  +  ++ Q+ +    
Sbjct: 3383076 SINLLKKMKTPFVVALNKVDRIYDWQATPDNPFQDSLKRQKQSAAKEFAERSQQAILAFA 3382897

Query: 172     ----------ENTKFRG-APIIPVAAKPGGPEAPETEAPQGIPELIELLTS 211
                          N  +R    ++P +A  G          +GIP+L+ LL S
Sbjct: 3382896 EQGLNAALYYNNQDYRKYVSLVPTSAHTG----------EGIPDLLMLLVS 3382774


>supercontig_1.17 of Capsaspora owczarzaki ATCC 30864
          Length = 792894

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 33/208 (15%)
 Frame = +3

Query: 5      RVNVNVGVLGHIDSGKTALA------------------------RALSTTASTAAFDKQP 40
              R ++N+  +GH+D+GK+ +                         + + +   + A D  P
Sbjct: 585807 REHLNIIFIGHVDAGKSTIGGHIMFLTGMVDKRTLEKYEREAKDQGMGSWYLSWALDTNP 585986

Query: 41     QSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLI 100
                RE+G T+++G + F                         G    + T++D PGH S +
Sbjct: 585987 DEREKGKTVEVGRATF-------------------------GTSKKRFTILDAPGHKSYV 586091

Query: 101    RTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQKLVVVLNKIDLL 151
                +IGGA   D+ +LVI   KG          QT+    +++     + LVVV+NK+D  
Sbjct: 586092 PNMIGGAAQADVAVLVISARKGEFETGFERGGQTRE-HAMLVKTAGVKHLVVVINKMDDP 586268

Query: 152    PEGKRQAAIDKMTKKMQKTLENTKFRGA 179
                G  Q   D+   K+   L+   +  A
Sbjct: 586269 TVGWAQERYDECVSKLTPYLKQCGYNTA 586352


>supercontig_1.15 of Capsaspora owczarzaki ATCC 30864
          Length = 930169

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 4/197 (2%)
 Frame = +3

Query: 4     RRVNV-NVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPA 62
             R+ N+ N+ V+ H+D GK++L  +L + A   A DK  + R      D    C ++   A
Sbjct: 66825 RKANIRNMSVIAHVDHGKSSLTDSLVSKAGIIAEDKAGKLRFTDTRPDEQERCITIKSTA 67004

Query: 63    -RLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTK 121
               L   L +       +P  G   L + L+D PGH      +    ++ D  ++V+D   
Sbjct: 67005 VSLFYELSDKDLTYIQQPVDGNSFL-INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 67181

Query: 122   GMQTQSAECLVIGQIACQKLVVVLNKID--LLPEGKRQAAIDKMTKKMQKTLENTKFRGA 179
             G+  Q+   L        K V++LNK+D  LL   + Q   +++    +K +E       
Sbjct: 67182 GVCVQTETVLRQAITERIKPVLMLNKMDRALL---ELQLDGERLYLTFRKIIEQVN---- 67340

Query: 180   PIIPVAAKPGGPEAPET 196
              II   ++P GP    T
Sbjct: 67341 SIIATFSEPDGPMGDAT 67391


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,803,208
Number of Sequences: 89
Number of extensions: 330120
Number of successful extensions: 2124
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 1405
length of query: 596
length of database: 9,347,932
effective HSP length: 105
effective length of query: 491
effective length of database: 9,338,587
effective search space: 4585246217
effective search space used: 4585246217
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)