TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...   151   8e-37
dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp...   114   9e-26
dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...    95   9e-20
dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl...    87   2e-17
dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl...    64   2e-10
dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp...    64   2e-10
dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl...    56   5e-08
dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl...    51   2e-06
dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...    48   1e-05

>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
              sequence
          Length = 1253087

 Score =  151 bits (381), Expect = 8e-37
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 52/340 (15%)
 Frame = -2

Query: 4      RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPAR 63
              R +N+NV V+GH+D GKT L R LS   STAA DK P SRE G T+DLGFSC  +P    
Sbjct: 361576 RFLNINVAVMGHVDVGKTTLVRFLSEILSTAALDKHPASRELGRTIDLGFSCTRLPASPV 361397

Query: 64     LRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM 123
              +   + +  A+ E     G   LQ+T +DCPGHASL+RT++ GA ++DL++LV+D + G+
Sbjct: 361396 VVQLVDDEAASLENVSYEG---LQLTWIDCPGHASLLRTVLLGASVMDLLLLVVDASAGI 361226

Query: 124    QTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIP 183
              Q Q+ ECL +  I  + +VV L+K D + +  + A +++  +++Q  +   ++   P  P
Sbjct: 361225 QAQTLECLALAAIFTKHVVVALHKCDRVRD--QPAVLEERLQQLQAYVSTNRW-WLP-TP 361058

Query: 184    VAAKPG--GPEAPETEAPQ-------------------GIPELIELLTSQISIPTRDPSG 222
              +A  P   G +A  T   +                   G+  L + +  Q +      SG
Sbjct: 361057 LATIPTWIGTDARRTAFERHQQHQHSILFPAADNDDIGGVVALAQAV--QAAAEQALASG 360884

Query: 223    -----------PF-LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIP----------- 259
                         P+ L +VDH F + GQGTV+TG +L+G + +G+ +              
Sbjct: 360883 LWQERLRLQRKPYALFAVDHAFEVTGQGTVLTGILLTGRLRIGEVIHAAFVGAGVASTKS 360704

Query: 260    --------ALKVVKKVKSMQMFHMPITSAMQGDRLGICVT 291
                       +   + V+S+Q++   ++  + GDR  + +T
Sbjct: 360703 RSEGTKKRLIADARSVRSIQVYRSSVSEIVAGDRAALGLT 360584



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 10/261 (3%)
 Frame = -3

Query: 8      VNVGVLGHIDSGKTALARAL---------STTASTAAFDKQPQSRERGITLDLGFSCFSV 58
              +N+ +  H+D GKT L  A+         + T S+   D     RERGIT+         
Sbjct: 287502 INIAICAHVDHGKTTLVDAILHHAKVFRENQTVSSLVMDSNELERERGITI--------- 287350

Query: 59     PLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVID 118
                    +++   ++             +++ ++D PGHA     +     + D M+LV+D
Sbjct: 287349 ----LSKNTAVVYRG------------VRINVIDTPGHADFGGEVQRVLSMADAMLLVVD 287218

Query: 119    VTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG 178
                +G + Q+   L       Q+++VV+NKID  P  +    ++K      +   + +   
Sbjct: 287217 SVEGPRPQTRYVLREALRLGQRVLVVVNKID-RPAARPVFVVNKTFDLFVELGASDEQAD 287041

Query: 179    APIIPVAA-KPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQ 237
               P++  +A K     AP+  A    P   E+L  ++  P      P  + V +  S   +
Sbjct: 287040 FPVVYASALKRVAGYAPDQLANDMGPLFEEIL--RLPRPRVALDAPLQLLVSNISSDDYK 286867

Query: 238    GTVMTGTILSGSISLGDSVEI 258
              G +  G I +G++  G +V +
Sbjct: 286866 GILGIGRIHAGTLRKGATVRV 286804


>dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete
               sequence
          Length = 1282939

 Score =  114 bits (286), Expect = 9e-26
 Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 19/329 (5%)
 Frame = +2

Query: 4       RRVNVNVGVLGHIDSGKTALARALSTTASTAA---------FDKQPQSRERGITLDLGFS 54
               R+ ++NVG +GH+D GKT LA A++   +             DK P+ R RGIT++    
Sbjct: 1267127 RKPHLNVGGMGHVDHGKTTLAAAITKVLAETGGARYTAYEEIDKAPEERARGITINASHL 1267306

Query: 55      CFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMM 114
                +  P  +                            VDCPGH   ++  I GA  +D  +
Sbjct: 1267307 KYETPSRSYAH-------------------------VDCPGHRDFVKNFITGAAQVDTAI 1267411

Query: 115     LVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLEN 173
               LV+    G Q Q+ E +++  Q+     VV LNK D++ + +    +D +  ++++ L  
Sbjct: 1267412 LVVSGPDGPQPQTQEHVLLSKQVGVPNFVVYLNKCDMVDDPE---LLDLVELEVRELLSK 1267582

Query: 174     TKFRG--APIIPVAAKPGGPEAPETEAPQG-IPELIELLTSQISIPTRDPSGPFLMSVDH 230
                ++ G   PI+  +A     +  ++E   G I +L+E+L  ++ IP RD   PFLM ++ 
Sbjct: 1267583 YEYDGDNVPIVRGSALKA-LQGDQSELGCGSIHKLLEIL-DKVPIPKRDLEKPFLMPIED 1267756

Query: 231     CFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK------VKSMQMFHMPITSAMQGD 284
                FSI G+GTV+TG + +G +  GD +EI  L+  +       V  ++ F   +  A  G+
Sbjct: 1267757 SFSITGRGTVVTGRVETGILRPGDEIEIVGLRPPEVAPMRTIVTGIETFKQSLPYAEAGE 1267936

Query: 285     RLGICVTQFDPKLLERGLVCAPESLHTVH 313
                +G  +     + + RG V A       H
Sbjct: 1267937 NVGCLLRGVKREDVLRGQVLAKPGTSRAH 1268023


>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score = 94.7 bits (234), Expect = 9e-20
 Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 35/329 (10%)
 Frame = -1

Query: 4      RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPAR 63
              R+  VN+G +GH+  GK+ L R++S    T  F  +    ER IT+ LG++   +    R
Sbjct: 765838 RQATVNIGTIGHVAHGKSTLVRSISGV-QTVRFRNE---LERNITIKLGYANAKLYRCER 765671

Query: 64     LRSSLPE-FQAAPEAEPEP--------GEPLL---QVTLVDCPGHASLIRTIIGGAQIID 111
                   P  ++A P   P+         G+ L     V+ VDCPGH  L+ T++ GA ++D
Sbjct: 765670 PECPRPYCYRAFPSDAPDSLPCEVPGCGQRLRLERHVSFVDCPGHDILMATMLNGAAVMD 765491

Query: 112    LMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQK 169
                +L+I   +   Q Q++E L   ++   + ++V  NKIDL+ E    +A     ++++ 
Sbjct: 765490 AALLIIAGNESCPQPQTSEHLAAVEVMQLRSIIVCQNKIDLVDE----SAARTQYEQIKN 765323

Query: 170    TLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVD 229
               +  T    API+P++A          +    +  ++E L   + +P RD   P  M + 
Sbjct: 765322 FIRGTVAEQAPIVPISA----------QLRYNVDVVVEYLIKHVPVPRRDFVSPPRMIII 765173

Query: 230    HCFSIKG--------QGTVMTGTILSGSISLGDSVEI-PAL------------KVVKKVK 268
                F +          +G V  G+I+ G + +GD +EI P +             ++ K+ 
Sbjct: 765172 RSFDVNKPGEDVENLRGGVAGGSIMQGVLRVGDLIEIRPGITIKDAEGNFKCQPIISKIV 764993

Query: 269    SMQMFHMPITSAMQGDRLGICVTQFDPKL 297
              SM      +  A+ G  +G+  T+ DP L
Sbjct: 764992 SMHAERNELQYAVPGGLIGV-GTKIDPTL 764909


>dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete
              sequence
          Length = 739753

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 42/346 (12%)
 Frame = +3

Query: 1      MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTA------------AF 36
              M   + +V+V V+GH+DSGK+               R +      A              
Sbjct: 577185 MGKEKTHVSVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEANEMGKGSFKYAWVL 577364

Query: 37     DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
              DK    RERGIT+D+    F                                T++D PGH
Sbjct: 577365 DKLKAERERGITIDIALWKFETDK-------------------------YYFTIIDAPGH 577469

Query: 97     ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
                 I+ +I G    DL +LV+          ++   QT+    L+   +  ++++V +NK
Sbjct: 577470 RDFIKNMITGTSQADLAILVVASPPGEFEAGISSNGQTRE-HALLAYTLGVKQMIVAVNK 577646

Query: 148    IDLLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVAAKPGG-------PEAPETEA 198
              +D       Q+  D++TK++   L+   +     P +P++   G         + P  + 
Sbjct: 577647 MDDKNVNWSQSRYDEITKELNLYLKKVGYNPDKVPKVPISGWTGDNLFERVPSDHPLAKW 577826

Query: 199    PQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEI 258
               +G P L+E L + I  P R    P  + +   + I G GTV  G + +G +  G  V  
Sbjct: 577827 YKG-PALLEALDA-IEPPKRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTF 578000

Query: 259    PALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304
                  +  +VKS++M H  +  A  GD +G  V     K L+RG VC
Sbjct: 578001 APTGLTTEVKSVEMHHESLPEAGPGDNVGFNVKNVSVKELKRGFVC 578138


>dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete
              sequence
          Length = 481791

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 77/340 (22%), Positives = 134/340 (39%), Gaps = 38/340 (11%)
 Frame = -2

Query: 7      NVNVGVLGHIDSGKTALA------------RALSTTASTA------------AFDKQPQS 42
              N+N+  +GH+D+GK+ L             R L      A            A D   Q 
Sbjct: 353003 NLNIVFIGHVDAGKSTLCGHLLYLTGNLDERTLEKYEKEAKSKGRESWKFAWALDLTEQE 352824

Query: 43     RERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRT 102
              R +G T D G + F                               +T++D PGH + +  
Sbjct: 352823 RSKGKTTDYGVASFRTATK-------------------------HITIIDAPGHKAYVPA 352719

Query: 103    IIGGAQIIDLMMLVIDVTKG-------MQTQSAECLVIGQIA-CQKLVVVLNKIDLLPEG 154
              +I G    D+ +LVI   KG          Q+ E  ++ + A  ++L+VV+NK+D     
Sbjct: 352718 MISGTGQADVAILVISARKGEFEAGFERGGQTREHAMLAKTAGVRQLIVVINKMDEPTVQ 352539

Query: 155    KRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPG----GPEAPETEAPQGIPELIEL 208
                +    ++  K+   L+   +R   +  +PV+   G     P  P T A      L+++
Sbjct: 352538 WSEERFREICDKLAPFLKQIGYRPQEVSWVPVSGFTGENLREPVHPSTCAWYKGGSLLQV 352359

Query: 209    LTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVK 268
              L + + +P R    P  M+V   F  +  G  + G + +G+I  GD + +   ++V  V 
Sbjct: 352358 LDA-LKLPPRPLDMPVRMTVVDRF--RDMGVCILGRVEAGTIRSGDRLLLMPPRLVVHVT 352188

Query: 269    SMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPES 308
              S+ M    +  A  GD + + V   +   +  G V   E+
Sbjct: 352187 SITMDAEEVPLAEPGDNVKLLVKGVEEDDIHSGQVLCAEN 352068


>dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete
              sequence
          Length = 859119

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 77/340 (22%), Positives = 134/340 (39%), Gaps = 38/340 (11%)
 Frame = +1

Query: 7      NVNVGVLGHIDSGKTALA------------RALSTTASTA------------AFDKQPQS 42
              N+N+  +GH+D+GK+ L             R L      A            A D   Q 
Sbjct: 668410 NLNIVFIGHVDAGKSTLCGHLLYLTGNLDERTLEKYEKEAKSKGRESWKFAWALDLTEQE 668589

Query: 43     RERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRT 102
              R +G T D G + F                               +T++D PGH + +  
Sbjct: 668590 RSKGKTTDYGVASFRTATK-------------------------HITIIDAPGHKAYVPA 668694

Query: 103    IIGGAQIIDLMMLVIDVTKG-------MQTQSAECLVIGQIA-CQKLVVVLNKIDLLPEG 154
              +I G    D+ +LVI   KG          Q+ E  ++ + A  ++L+VV+NK+D     
Sbjct: 668695 MISGTGQADVAILVISARKGEFEAGFERGGQTREHAMLAKTAGVRQLIVVINKMDEPTVQ 668874

Query: 155    KRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPG----GPEAPETEAPQGIPELIEL 208
                +    ++  K+   L+   +R   +  +PV+   G     P  P T A      L+++
Sbjct: 668875 WSEERFREICDKLAPFLKQIGYRPQEVSWVPVSGFTGENLREPVHPSTCAWYKGGSLLQV 669054

Query: 209    LTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVK 268
              L + + +P R    P  M+V   F  +  G  + G + +G+I  GD + +   ++V  V 
Sbjct: 669055 LDA-LKLPPRPLDMPVRMTVVDRF--RDMGVCILGRVEAGTIRSGDRLLLMPPRLVVHVT 669225

Query: 269    SMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPES 308
              S+ M    +  A  GD + + V   +   +  G V   E+
Sbjct: 669226 SITMDAEEVPLAEPGDNVKLLVKGVEEDDIHSGQVLCAEN 669345



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 35/285 (12%)
 Frame = -3

Query: 12     VLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEF 71
              +LGH+D+GKT L   +  T          +    GIT  +G + F +             
Sbjct: 372652 ILGHVDTGKTKLLDKIRHT-------HVQEGEAGGITQQIGATYFPIEAVR--------- 372521

Query: 72     QAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECL 131
              Q A +  PE    +  + ++D PGH S       G+ + D+ +LV+D+  G++ Q+ E +
Sbjct: 372520 QEAAKVNPELTYRIPSLLIIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTLESI 372341

Query: 132    VIGQIACQKLVVVLNKIDLLPEGK-------RQAAID------KMTKKMQKT-------- 170
               + ++     +V LNK+D L   K       RQA  +      +  +++++T        
Sbjct: 372340 ELLKMRKTPFIVALNKVDRLYGWKPCPMAPIRQALEENPSTAAEFERRVRETKTAFAEIG 372161

Query: 171    ------LENTKF-RGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGP 223
                     ENT + R   ++P +A  G          +GIP+L+ LL   + +P R     
Sbjct: 372160 FNAELYWENTDYRRNLSLVPTSAISG----------EGIPDLLMLL---VQLPQR-LLVE 372023

Query: 224    FLMSVDHCFS-------IKGQGTVMTGTILSGSISLGDSVEIPAL 261
               L  +D  +        I G GT +   +  G++   D++ +  L
Sbjct: 372022 RLKFIDFVYCTVLEVKVIDGLGTTIDVVLTGGALHEADTIVVCGL 371888


>dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete
             sequence
          Length = 513455

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 9/261 (3%)
 Frame = -3

Query: 9     NVGVLGHIDSGKTALA-RALSTTASTAAFDKQPQ-------SRERGITLDLGFSCFSVPL 60
             N  +  H+D+GK+ LA R L  T + +A + + Q        RERGIT+ L         
Sbjct: 61794 NFSITAHVDAGKSTLADRLLERTGAVSAREMREQYLDSLELERERGITVKLQ-------- 61639

Query: 61    PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVT 120
              AR+  +  + Q               + L+D PGH      +    Q  +  +L++D T
Sbjct: 61638 AARMNYTAHDGQT------------YVLNLIDTPGHVDFSYEVSRSLQACEGALLLVDAT 61495

Query: 121   KGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAP 180
             KG++ Q+     +      ++V +LNKID LP  + + A  ++ + +   + +       
Sbjct: 61494 KGVEAQTLANAYLAMENNLEIVPILNKID-LPAAQPEQASQEVEQVIGIDMRDA------ 61336

Query: 181   IIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIP-TRDPSGPFLMSVDHCFSIKGQGT 239
              +  +AK G           GI E +E +  +I  P  RD + P    +        +G 
Sbjct: 61335 -VRTSAKLG----------IGIEETLEAIVKRIPPPRVRDENAPLRALIFDSAYDDYRGV 61189

Query: 240   VMTGTILSGSISLGDSVEIPA 260
             V+   I+ G++   D +   A
Sbjct: 61188 VVYFRIVDGTLRKSDRIRFMA 61126


>dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete
              sequence
          Length = 810151

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
 Frame = -3

Query: 9      NVGVLGHIDSGKTALARALSTT---------ASTAAFDKQPQSRERGITLDLGFSCFSVP 59
              N+ V GHID GKT L  +L  +               D +   + RGIT+        V 
Sbjct: 287600 NICVTGHIDHGKTTLTDSLLMSNGFLSQRLVGKARYLDFRDDEQNRGITMKSA----GVT 287433

Query: 60     LPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV 119
              L  R        +AA E           VTL+D PGH      +   A++ D  ++V+DV
Sbjct: 287432 LYHRYGGREANTKAADE---------YVVTLLDSPGHVDFAAEVSAAARLSDGSLIVVDV 287280

Query: 120    TKGMQTQSAECLVIGQIACQKLVVVLNKIDLL 151
               +G+ +Q+   L        + ++VLNKID L
Sbjct: 287279 VEGVCSQTRTVLRQALSEGLQPILVLNKIDRL 287184


>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 11/188 (5%)
 Frame = -2

Query: 9      NVGVLGHIDSGKTALARALSTTASTA-----------AFDKQPQSRERGITLDLGFSCFS 57
              N+G++ H+D+GKT L   +   A  +             D   + R+RGIT+    +  +
Sbjct: 365209 NIGIVAHVDAGKTTLTEKILYYAGVSRRVGNVDHGDTVMDYLWEERQRGITIQAAATSVT 365030

Query: 58     VPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVI 117
               P               P  +P+  +  + + +VD PGH      +     ++D  ++++
Sbjct: 365029 WP---------------PFPQPKDRKSAVLINIVDTPGHVDFTFEVERSLSVMDGAVVLV 364895

Query: 118    DVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFR 177
              D   G+Q Q+A             ++ LNK D     +++A + +  ++++     T   
Sbjct: 364894 DAIAGIQAQTATVWRQTNRYGLPRLIFLNKCD-----RKEADVSRCLQQIR-----TSLG 364745

Query: 178    GAPIIPVA 185
              G P++  A
Sbjct: 364744 GRPVLLTA 364721


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,668,407
Number of Sequences: 20
Number of extensions: 192628
Number of successful extensions: 1140
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 548
length of query: 596
length of database: 5,515,582
effective HSP length: 101
effective length of query: 495
effective length of database: 5,513,562
effective search space: 2729213190
effective search space used: 2729213190
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)