TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349447.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   408   e-114

>gb|GL349447.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.15,
             whole genome shotgun sequence
          Length = 583276

 Score =  408 bits (1048), Expect = e-114
 Identities = 226/497 (45%), Positives = 308/497 (61%), Gaps = 30/497 (6%)
 Frame = +3

Query: 4     EINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQRKWPELGWDEMSIELLLSDLAQM 63
             E N  LA++ L  + Y++QG  ++  R   V+SLL+QR+ P  GW+E SI   L +LA M
Sbjct: 89577 EGNLKLAQEFLPEE-YVRQGGVSLGGRARAVRSLLSQRQLPRQGWNEASISAFLDELATM 89753

Query: 64    DSNNFPANIGAGEREARVYSDLVARRHFRMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIM 123
             DSNNF    G GEREARV+S LVARRHF + HG+GRSG++AA+QPKAAGSSL+ KL N +
Sbjct: 89754 DSNNFADRAGVGEREARVFSPLVARRHFGLGHGVGRSGELAAVQPKAAGSSLMYKLANAL 89933

Query: 124   CLDVIRLAGVHAANACIALPLATGMAMVMTLLTL--------------------AQTRPP 163
              L  +RLAG+  A   I +P ATGMA+V+ LL L                    A     
Sbjct: 89934 VLHALRLAGMRVAKKAIIVPTATGMALVLCLLALCAQDEEANREEHGSSADDGGASESRH 90113

Query: 164   SARKVLWLRIDQKSCIKAITACGFEVVVVDNAI---EGDEVRTDLSALQHQVNTVGKDNI 220
             + R V+W RIDQK+  KAI   G   +VV+        D + TD+  ++  + +VG DN+
Sbjct: 90114 ARRYVIWPRIDQKTAFKAILTAGLTPLVVEPRKCPRGSDALVTDVDGVRAAIESVGADNV 90293

Query: 221   LCIVSTTSCFAPRCPDRIVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDA 280
             LCI+STTSCFAPR PD++V +A++ +   I HV+NNAYG+QS +   L+ +A + GR+DA
Sbjct: 90294 LCILSTTSCFAPRTPDKVVALAELASEYGIGHVVNNAYGVQSRRCMGLLNEAARVGRLDA 90473

Query: 281   FVQSSDKNLMVPVGGALVAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSL 340
             FVQS+DKN MVPVGGA+VA  ++AF+  +  +YPGRASAAP VD+FITLL+MG++G+  L
Sbjct: 90474 FVQSTDKNFMVPVGGAVVASANKAFVDAVSLLYPGRASAAPIVDLFITLLAMGEEGWTEL 90653

Query: 341   LKQRKVVFEQLRAKLGAFAVSQGERLLETPHNPISLAITLSTFGSD-------ATRLGSF 393
             L  R  VF   +A+L   A   G RLL+   N IS+A++L    S+        T LGS 
Sbjct: 90654 LASRADVFGYAQAELAQVAERTGLRLLDVRGNDISMALSLDALSSECGGDDDAVTMLGSM 90833

Query: 394   LFTRCVSGTRVVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDALI 453
             LF R VSG RVV   +   T ++GPV+ +++G+H SA    Y+  AAAIGMT  ++D  +
Sbjct: 90834 LFVRSVSGARVVVPSK---TKTIGPVTFAHYGSHSSASSEPYVNVAAAIGMTSTDIDRFV 91004

Query: 454   DRLTAAFKDLRAAMNQP 470
              R        R A   P
Sbjct: 91005 VRFEKTLAAWRKAHASP 91055


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,614,017
Number of Sequences: 131
Number of extensions: 293915
Number of successful extensions: 2144
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1868
Number of HSP's gapped (non-prelim): 783
length of query: 470
length of database: 9,560,209
effective HSP length: 103
effective length of query: 367
effective length of database: 9,546,716
effective search space: 3503644772
effective search space used: 3503644772
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)