TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743892.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...   184   3e-99

>gb|GG743892.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.10, whole
              genome shotgun sequence
          Length = 790954

 Score =  184 bits (468), Expect(3) = 3e-99
 Identities = 119/289 (41%), Positives = 165/289 (57%), Gaps = 71/289 (24%)
 Frame = +1

Query: 186    GFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKIC 245
              G E VV++N ++GDE+RTDL+AL+ ++  +G +NILC++STTSCFAPR  DR+ EIA++C
Sbjct: 241720 GLEPVVIENVLDGDELRTDLAALEAKMRELGPENILCVLSTTSCFAPRGYDRVDEIAQLC 241899

Query: 246    ------ATES-----------IPHVINNAYGIQSSKITALIQD----------------- 271
                    AT S           + HVINNAYG+QSSK T L+                   
Sbjct: 241900 RQYDIGATSSPLAPCSICIVQLGHVINNAYGLQSSKCTHLVNQVRIY*TLENDDEARVA* 242079

Query: 272    AHKAGRVDAFVQSSDKNLMVPVGGALVA------GHDRAFIKRIGEMYP----------- 314
              A + GRVDA +QS+DKN +VPVGGA+++        DR  + R    +P           
Sbjct: 242080 AFRLGRVDACIQSTDKNFLVPVGGAVISVTSGLCTSDRQDVPRSIASHPPPPPWPCVMTL 242259

Query: 315    --GRASAAPSVDIFITLLSMGQQGFRSLLKQRKVVFEQLRAKLGAFAVSQGERLLETPHN 372
                GRAS AP++D+FIT+L +G++G+++LL +RK +     A L + A + GER+L T HN
Sbjct: 242260 RVGRASNAPALDLFITMLHLGRRGYKALLDERKRLVPYFSAALTSVATAHGERVLVTRHN 242439

Query: 373    P-----------------ISLAITLS-TFGSDATRLGSFLFTRCVSGTR 403
                                IS  +TLS   G+DAT LGS LF+R VSGTR
Sbjct: 242440 DVHIVDTSVPSVRPNLV*ISFCLTLSHVGGNDATFLGSMLFSRGVSGTR 242586



 Score =  182 bits (463), Expect(3) = 3e-99
 Identities = 101/192 (52%), Positives = 134/192 (69%), Gaps = 19/192 (9%)
 Frame = +3

Query: 1      MDTEINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQRKWPELGWDEMSIELLLSDL 60
              M + +NQ LA D + + AYI+QG+DA+++ +  + +LLAQRK PE GWD++SI++LL+DL
Sbjct: 241065 MQSSVNQKLATDFV-DAAYIRQGSDALKSHEKKLTALLAQRKLPEDGWDDLSIQVLLNDL 241241

Query: 61     AQMDSNNFPANIGAGEREARVYSDLVARRHFRMAHGIGRSGDIAAIQPKAAGSSLIMKLV 120
              AQMDSNNF  N GAGEREARV S LV  R F +AHG+GRSGDI A+QPKAAGSSL+++L 
Sbjct: 241242 AQMDSNNFAHNAGAGEREARVASSLVRNRCFHLAHGVGRSGDICAVQPKAAGSSLLVQLT 241421

Query: 121    NIMCLDVIRLA--------------GVHAANACIALPLATGMAMVMTLLTL-AQT----R 161
              N + LD++ LA              G+  A + I LP+ATGMA++  +LTL AQ     R
Sbjct: 241422 NCLVLDMLHLAGRRRIPCSDFIV*LGIKNAKSAIVLPVATGMALLFAMLTLQAQARVPGR 241601

Query: 162    PPSARKVLWLRI 173
              P + R VLW RI
Sbjct: 241602 PHTKRYVLWPRI 241637



 Score = 36.2 bits (82), Expect(3) = 3e-99
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 420    SLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDAL 452
              +   FGAH + Y  AYL+AA AIGMT+   D++
Sbjct: 242673 AFEGFGAHSATYPTAYLSAACAIGMTQDVRDSI 242771


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,696,756
Number of Sequences: 1445
Number of extensions: 471356
Number of successful extensions: 3240
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 1998
length of query: 470
length of database: 17,710,878
effective HSP length: 107
effective length of query: 363
effective length of database: 17,556,263
effective search space: 6372923469
effective search space used: 6372923469
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)