TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376621.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...   355   4e-98

>gb|GL376621.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582024,
              whole genome shotgun sequence
          Length = 492436

 Score =  355 bits (912), Expect = 4e-98
 Identities = 181/394 (45%), Positives = 256/394 (64%), Gaps = 36/394 (9%)
 Frame = -2

Query: 19     YIQQGADAIRTRQNLVKSLLAQRKWPELGWDEMSIELLLSDLAQMDSNNFPANIGAGERE 78
              Y++QG  AIR R+ L  +LL+QR+ P+ GWDE ++EL+L  LA MDSNNF  NIGAGERE
Sbjct: 366537 YVEQGLAAIRNREQLFTALLSQRRVPDDGWDEQTVELVLQSLAAMDSNNFRTNIGAGERE 366358

Query: 79     ARVYSDLVARRHFRMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRLAGVHAANA 138
              ARV+S LVA+RHF + HG+GRSGD+AA+QPKAAGSSLI++L N +  D++R AG+ +  +
Sbjct: 366357 ARVFSSLVAKRHFHLCHGVGRSGDVAAVQPKAAGSSLIVQLTNALAKDLLREAGLRSITS 366178

Query: 139    CIALPLATGMAMVMTLLTLAQTRPPSARKVLWLRIDQKSCIKAITACGFEVVVVDNAI-- 196
               + LP+ATGM++ + LLTL + + P A+ V+W RIDQKSC K+I   G   +V++N +  
Sbjct: 366177 ALVLPVATGMSLTLVLLTL-RAQKPDAKYVIWPRIDQKSCFKSILTAGLTPLVLENTLSE 366001

Query: 197    EGDEVRTDLSALQHQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATESIPHVINN 256
              +GD++RTD+  LQ  ++     ++L ++STTSCFAPR  D +  IA++C T  I HVINN
Sbjct: 366000 DGDQLRTDMDGLQRLIDAHRSGDVLAVLSTTSCFAPRGYDDVEAIARVCQTHDIAHVINN 365821

Query: 257    AYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVGGALVAGHDRAFIKRIGEMYPGR 316
              AYG+Q+SK T ++  A + GRVDA VQS DKN MVPVGGA+V       +  + + YPGR
Sbjct: 365820 AYGVQASKCTHVVNQAMRVGRVDAIVQSLDKNFMVPVGGAIVCAPSAEMVASVSKCYPGR 365641

Query: 317    ASAAPSVDIFITLLSM----------------------------------GQQGFRSLLK 342
              A+  P++D FIT+L M                                  G++G+R LL+
Sbjct: 365640 AAITPTLDFFITMLQMVL*PLAMSTCLRFSDTCASRADTLLLLLLFS*R*GRKGYRQLLQ 365461

Query: 343    QRKVVFEQLRAKLGAFAVSQGERLLETPHNPISL 376
              +RK + + L+ +L   A   GER+L  P N + L
Sbjct: 365460 ERKTLAKYLQEQLQIVAHEVGERVLHVPFNEVLL 365359


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,739,790
Number of Sequences: 82
Number of extensions: 348603
Number of successful extensions: 2074
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1944
Number of HSP's gapped (non-prelim): 378
length of query: 470
length of database: 14,267,206
effective HSP length: 106
effective length of query: 364
effective length of database: 14,258,514
effective search space: 5190099096
effective search space used: 5190099096
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)