TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...   243   1e-64

>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
              sequence
          Length = 1098047

 Score =  243 bits (621), Expect = 1e-64
 Identities = 139/298 (46%), Positives = 187/298 (62%), Gaps = 27/298 (9%)
 Frame = -1

Query: 24     ADAIRTRQNLVKSLLAQRKWPELGWDEMSIELLLSDLAQMDSNNFPAN------------ 71
              A+ I + ++L ++LL  R+ PE GW ++ I+ +L  +A +D+NN  +             
Sbjct: 920597 ANLIASHKDL-RTLLVNRRLPEHGWSDVQIQHVLYTMATLDTNNKRSGSSSSDDSGSSRW 920421

Query: 72     IGAGEREARVYSDLVARRHFRMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRL- 130
               G GERE RVYS LV+ RHF ++HG+GRSGDIA  QPKA GS+++ KL   + LD +R  
Sbjct: 920420 CGVGEREGRVYSALVSSRHFGLSHGVGRSGDIAEPQPKALGSTVLAKLTLCLVLDAVRRG 920241

Query: 131    AGVH---AANACIALPLATGMAMVMTLLTLAQTRP-----------PSARKVLWLRIDQK 176
              +G+H   AA + I LPL TGM+M + L TL Q +            P    VLW RIDQK
Sbjct: 920240 SGLHPQTAAKSGILLPLCTGMSMALVLGTLRQLQDNHQTSANAAIKPYRNIVLWSRIDQK 920061

Query: 177    SCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVSTTSCFAPRCPD 236
              SC KAI + G E VVV   + GD V TDL A Q  + T G D +L +V+TTSCFAPR PD
Sbjct: 920060 SCFKAIQSAGLECVVVPTRLAGDAVVTDLDAFQASLLTYG-DRVLAVVTTTSCFAPRVPD 919884

Query: 237    RIVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVG 294
              ++  +A++CA + +PHVINNAYG+QSS  + L+  A   GRVDA V S+DKN MVP+G
Sbjct: 919883 QVDAVARLCAEQCVPHVINNAYGLQSSDTSKLLNRACAVGRVDAIVCSTDKNFMVPIG 919710



 Score =  124 bits (312), Expect = 9e-29
 Identities = 72/181 (39%), Positives = 99/181 (54%), Gaps = 17/181 (9%)
 Frame = -3

Query: 293    VGGALVAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSLLKQRKVVFEQLR 352
              +GGA+V   D + I+ +G++Y GRASA+P +D+FITL SMG +G++ LL  R+++     
Sbjct: 919584 IGGAIVLSPDESLIQNVGKVYAGRASASPMLDLFITLCSMGLRGYQQLLTSRRILLPTFT 919405

Query: 353    AKLGAFAVSQGERLLETPHNPISLAITL-----------------STFGSDATRLGSFLF 395
               +L   A   GER+LE   N IS  +TL                 ++   D + LG+ LF
Sbjct: 919404 ERLKEVANKYGERVLECRTNCISFGVTLDGLVRPPRQDEDDVAYRTSVSRDVSSLGAMLF 919225

Query: 396    TRCVSGTRVVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDALIDR 455
               RCVSGTRVV          +G +    FG+ H AY  AYLTAA AIG+T  E D    R
Sbjct: 919224 QRCVSGTRVVP---RGTVQRMGGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGDDFFTR 919054

Query: 456    L 456
              L
Sbjct: 919053 L 919051



 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
 Frame = -3

Query: 163    PSARKVLWLRIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILC 222
              PS   VLW  IDQKSC KAI + G E VVV   +EGD V TDL A Q  +   G D +L 
Sbjct: 914580 PSRNIVLWSWIDQKSCFKAIQSAGLECVVVPTRLEGDAVVTDLDAFQAFLLAYG-DRVLA 914404

Query: 223    IVSTTSCFAPRCPDRIVEIAKICATESIP-HVINNAYGI 260
              +V+TTSCFAP+ PD++  +A++CA + +P   +N ++ +
Sbjct: 914403 VVTTTSCFAPQVPDQVDAVARLCAEQ*LPTSTVNRSWSV 914287



 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 32/71 (45%), Positives = 39/71 (54%)
 Frame = -1

Query: 386    DATRLGSFLFTRCVSGTRVVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMT 445
              D +  G+ LF RCVSGTR+V          +G +    FG+ H AY  AYLTAA AIG+T
Sbjct: 914219 DVSSSGAMLFQRCVSGTRIVPR---GTVQRMGGMEFCGFGSSHDAYPHAYLTAACAIGLT 914049

Query: 446    EQEVDALIDRL 456
                E D    RL
Sbjct: 914048 ASEGDDFFTRL 914016


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,749,132
Number of Sequences: 31
Number of extensions: 168995
Number of successful extensions: 918
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 78
length of query: 470
length of database: 7,911,228
effective HSP length: 102
effective length of query: 368
effective length of database: 7,908,066
effective search space: 2910168288
effective search space used: 2910168288
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)