TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01001454.1| Hyaloperonospora parasitica strain Emoy2 v-7....    92   2e-30
gb|ABWE01000154.1| Hyaloperonospora parasitica strain Emoy2 v-7....    66   1e-10

>gb|ABWE01001454.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont60.4, whole genome
             shotgun sequence
          Length = 13529

 Score = 92.4 bits (228), Expect(3) = 2e-30
 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
 Frame = -3

Query: 226   TTSCFAPRC--PDRIVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQ 283
             + S   P+C   D I+ +  +    S  HVINNAYG+Q+S     I  A + GRVDA VQ
Sbjct: 13077 SVSVSVPKCVRADEILSLLFV----SKAHVINNAYGVQASACVHQIDLAMRIGRVDAVVQ 12910

Query: 284   SSDKNLMVPVGGALVAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSM 332
             S DKN +VPVGGA+V       +  + + YPGRASA P++D FIT+L M
Sbjct: 12909 SLDKNFLVPVGGAIVCSTSSEIVDSVAKFYPGRASATPALDFFITMLQM 12763



 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
 Frame = -1

Query: 109   KAAGSSLIMKLVNIMCLDVIRLAGVHAANA--CIALPLATGMAMVMT---------LLTL 157
             KAAGSSL+++L N +  DV+RLAG+ A  A  C    L    A             L  L
Sbjct: 13529 KAAGSSLLVQLANALAKDVLRLAGLRAVQAHWCCL*RLGCRYAGAAATEKDKTRGALRHL 13350

Query: 158   AQTRPPSARKVLWL-----RIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQV 212
             A  RP    ++L+      R D  S  K  +     +  V        ++TDL  +   +
Sbjct: 13349 ASGRP----EILFQGHFGGRTDATSAGKLFSRGR*SLWGV--------LKTDLVGMAALM 13206

Query: 213   NTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATESI 250
             +  G ++IL + STTSCFAPR  D + EIA++C   +I
Sbjct: 13205 DQYGSESILAVSSTTSCFAPRAYDAVKEIAQLCQERNI 13092



 Score = 41.2 bits (95), Expect(3) = 2e-30
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 33/104 (31%)
 Frame = -1

Query: 333   GQQGFRSLLKQRKVVFEQLRAKLGAFAVSQGERLLETPHNP------------------- 373
             G+ G+R LL++RK +   +R KL   A  +GE +L+   N                    
Sbjct: 12677 GKNGYRRLLEERKHLAAYMREKLEVLAAEEGEHVLKVSTNEVGTIELKLRQCWFSDRLTF 12498

Query: 374   ----ISLAITLSTFGSDA----------TRLGSFLFTRCVSGTR 403
                 IS A+TL+TF S+           T LG+ LF+R V G R
Sbjct: 12497 VRA*ISYAMTLATFCSEVEDRQEKSRRLTLLGAMLFSRGVCGAR 12366



 Score = 38.9 bits (89), Expect(3) = 2e-30
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -3

Query: 423   NFGAHHSAYHGAYLTAAAAIGMTEQEVDALIDRLTAAFKDLRAAMN 468
             +FGAH+  +  AY+T A  +GM + EVD L+ +L     D R   N
Sbjct: 12246 SFGAHYDEFPVAYVTFACVLGMQKTEVDMLMTKLRKTIHDWRKKQN 12109


>gb|ABWE01000154.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont60.5, whole
           genome shotgun sequence
          Length = 69632

 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = -2

Query: 19  YIQQGADAIRTRQNLVKSLLAQRKWPELGWDEMSIELLLSDLAQMDSNNFPANIG 73
           Y+QQG  AIR+R  LV +LLAQR  P+ GWD+ S+E+LL  L+ MDSNNF A  G
Sbjct: 229 YVQQGLAAIRSRHKLVSTLLAQRCLPDDGWDDTSVEMLLQTLSAMDSNNFRAAYG 65


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,832,817
Number of Sequences: 5422
Number of extensions: 464808
Number of successful extensions: 2591
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 969
length of query: 470
length of database: 22,486,378
effective HSP length: 109
effective length of query: 361
effective length of database: 21,895,380
effective search space: 7904232180
effective search space used: 7904232180
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)