genewise output
Score 190.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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gi|320165142|gb  109 KAAGSSLIMKLVNIMCLDVIRLAGVHAANACIALPLATGMAMVMTLLTL 
                     KAAGSSL+++L N +  DV+RLAG+ A  A + LP+ATGM++ + LL L 
                     KAAGSSLLVQLANALAKDVLRLAGLRAVQA!LVLPVATGMSL!LVLLQL 
gi|199610358|g-13529 agggttccgccgagcgaggcccggccggcg2tgccggagatc2cgcccc 
                     accgcctttatcactcaattgtcgtgctac tttctccgtct ttttat 
                     atcgggcggggcctcgacggtggggaaaag gggtagtggga ggggag 


gi|320165142|gb  158 AQTRPPSARKVLWLRIDQKSCIKAITACGFEVVVVDNA-IEGDEV---- 
                      +TRP  AR V+W R+DQKSC+KAI A G+  +V+ N  +  DEV     
                     KKTRP-AARYVIWPRVDQKSCFKAILAAGLTPLVLANCLVVADEVCGGY 
gi|199610358|g-13384 aaaac ggctgatccggcatttagatgggcaccgcgattggggggtggt 
                     aacgc ccgattgcgtaaacgtacttccgtcctttcagtttcaatggga 
                     agaac ggccctgtgccgactcgctggaaggaaggattacgatactggt 


gi|320165142|gb  202 -RTDLSALQHQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATES 
                      +TDL  +   ++  G ++IL + STTSCFAPR  D + EIA++C   + 
                     !KTDLVGMAALMDQYGSESILAVSSTTSCFAPRAYDAVKEIAQLCQERN 
gi|199610358|g-13240 2aagtggaggtagctgagaatggaaaaattgccgtgggagagcctcgca 
                      acattgtccttaaaggagttctggccggtccgcaactaatcatgaaga 
                      agcgtggagggcacttattgtatccgcctattgtttgggtcgtcgaac 


gi|320165142|gb  250 I                          HVINNAYGIQSSKITALIQDAH 
                     I                          HVINNAYG+Q+S     I  A  
                     I          P:A[gca]        HVINNAYGVQASACVHQIDLAM 
gi|199610358|g-13094 aGGTACAAA  Intron 1   AAGCAcgaaagtggcgtgtgccagtga 
                     t <1-----[13090:13008]-1>  attaacagtacccgtaatatct 
                     t                          cgcccgtcggatactcgctgtg 


gi|320165142|gb  274 KAGRVDAFVQSSDKNLMVPVGGALVAGHDRAFIKRIGEMYPGRASAAPS 
                     + GRVDA VQS DKN +VPVGGA+V      ++  + ++YPGRASA P+ 
                     RIGRVDAVVQSLDKNFLVPVGGAIVCSTSSEIVDSVAKFYPGRASATPA 
gi|199610358|g-12939 cagcgggggcacgaattgcggggagttatagaggaggattcgcgagacg 
                     gtggtacttagtaaatttctggcttgcccgattagtcatacggcgcccc 
                     ctctgttggattcgctggggttgctcggctactccctgttttaccccca 


gi|320165142|gb  323 VDIFITLLSM                       GQQGFRSLLKQRKVVF 
                     +D+FIT+L M                       G+ G+R LL++RK +  
                     LDFFITMLQM                       GKNGYRRLLEERKHLA 
gi|199610358|g-12792 cgttaaaccaGTCGGTT  Intron 2   TAGgaagtccccggcaccg 
                     tatttcttat<0-----[12762:12678]-0>gaagaggttaagaatc 
                     ctttcagtgg                       cgtatgaataacgtta 


gi|320165142|gb  349 EQLRAKLGAFAVSQGERLLETPHNP                       I 
                       +R KL  +A  +GE +L+   N                        I 
                     AYMREKLEVLAAEEGEHVLKVSTNE                       I 
gi|199610358|g-12629 gtacgacggtggggggcgcagtaagGTAGGCA  Intron 3   TAGa 
                     catgaatattccaagaattatccaa<0-----[12554:12486]-0>t 
                     tcgtgacgagagggtgtggattgcg                       c 


gi|320165142|gb  375 SLAITLSTFGSDA----------TRLGSFLFTRCVSGT            
                     S A+TL+TF S+           T LG++LF+R V G             
                     SYAMTLATFCSEVEDRQEKSRRLTLLGAMLFSRGVCGA            
gi|199610358|g-12482 ttgaatgatttggggacgatcccaccggacttcggtgg            
                     cactctcctgcataagaaacggtcttgctttcggtggc            
                     ctggaacatcgacatgagggagggagctgttttggtgg            


gi|320165142|gb  403                           VVAADRAAATTSVGPVSLSNFGA 
                                               VV+      +  +      +FGA 
                                R:R[aga]       VVSC---LDSKCIAGYEFDSFGA 
gi|199610358|g-12368 AGGTGAGTC  Intron 4   CAGAggtt   cgaataggtgtgttgg 
                       <2-----[12366:12296]-2> ttcg   tagagtcgaatactgc 
                                               gaac   ctcatttgcgccttaa 


gi|320165142|gb  427 HHSAYHGAYLTAAAAIGMTEQEVDALIDRLTAAFKDLRAAMN        
                     H+  +  AY+T A  +GM + EVD L+ +L   + D R  +N        
                     HYDEFPVAYVTFACVLGMQKTEVDMLMTKLRKTIHDWRKKQN        
gi|199610358|g-12234 ctggtcggtgatgtgtgacaagggacaaatcaaacgtcaaca        
                     aaaatctcatctcgttgtaacatatttcatgactaaggaaaa        
                     cccgcggcccttccggcgaacggcgcgggggagcccgaggat        


//
Making a A in phase 1 intron
Making a R in phase 2 intron
>gi|199610358|gb|ABWE01001454.1|.pep
KAAGSSLLVQLANALAKDVLRLAGLRAVQAXLVLPVATGMSLXLVLLQLKKTRPAARYVI
WPRVDQKSCFKAILAAGLTPLVLANCLVVADEVCGGYXKTDLVGMAALMDQYGSESILAV
SSTTSCFAPRAYDAVKEIAQLCQERNIAHVINNAYGVQASACVHQIDLAMRIGRVDAVVQ
SLDKNFLVPVGGAIVCSTSSEIVDSVAKFYPGRASATPALDFFITMLQMGKNGYRRLLEE
RKHLAAYMREKLEVLAAEEGEHVLKVSTNEISYAMTLATFCSEVEDRQEKSRRLTLLGAM
LFSRGVCGARVVSCLDSKCIAGYEFDSFGAHYDEFPVAYVTFACVLGMQKTEVDMLMTKL
RKTIHDWRKKQN
//
>gi|199610358|gb|ABWE01001454.1|.[13529:13438].sp
AAAGCTGCCGGGTCGTCGCTCCTGGTGCAGCTGGCCAACGCTCTCGCGAAAGACGTGCTG
CGTCTGGCGGGGCTGCGAGCAGTACAAGCG
>gi|199610358|gb|ABWE01001454.1|.[13437:13403].sp
TTGGTGCTGCCTGTAGCGACTGGGATGTCGCTA
>gi|199610358|gb|ABWE01001454.1|.[13402:13251].sp
CTGGTGCTGCTGCAACTGAAAAAGACAAGACCCGCGGCGCGCTACGTCATTTGGCCTCGG
GTCGACCAGAAATCCTGTTTCAAGGCCATTTTGGCGGCAGGACTGACGCCACTAGTGCTG
GCAAATTGTTTAGTCGTGGCAGATGAAGTC
>gi|199610358|gb|ABWE01001454.1|.[13238:12107].sp
AAAACGGACTTGGTTGGGATGGCAGCGTTGATGGACCAATACGGTAGTGAAAGTATTTTG
GCTGTAAGTAGCACCACGAGCTGCTTTGCACCTCGTGCGTATGATGCTGTGAAGGAGATT
GCCCAGCTTTGCCAGGAACGAAACATTGCACACGTGATCAACAACGCGTATGGCGTGCAG
GCATCTGCATGCGTTCACCAGATCGATTTGGCTATGCGCATTGGCCGTGTGGATGCTGTG
GTGCAAAGTCTTGACAAGAACTTTTTGGTGCCGGTGGGTGGTGCGATCGTTTGCTCGACG
TCCAGTGAAATCGTTGACAGCGTCGCTAAGTTTTATCCTGGTCGAGCCAGCGCCACCCCC
GCACTCGATTTTTTTATCACAATGCTTCAGATGGGCAAGAATGGATATCGGCGACTACTT
GAAGAACGCAAGCATCTTGCAGCTTACATGCGTGAGAAACTCGAGGTATTGGCAGCGGAG
GAGGGTGAGCATGTGCTGAAAGTTTCTACGAACGAGATCTCCTATGCGATGACATTAGCC
ACATTTTGCTCGGAAGTCGAAGATAGGCAAGAGAAGTCGCGACGGCTGACGCTACTGGGC
GCTATGCTTTTTTCTCGTGGGGTGTGTGGGGCGAGAGTGGTATCATGCCTCGATAGCAAA
TGTATTGCTGGGTACGAGTTCGACTCTTTTGGAGCACACTACGACGAGTTCCCGGTGGCC
TACGTCACTTTTGCCTGCGTGTTGGGCATGCAAAAAACCGAGGTGGACATGCTCATGACG
AAGTTGCGGAAAACGATCCACGACTGGCGAAAGAAGCAAAAT
//
gi|199610358|gb|ABWE01001454.1|	GeneWise	match	13529	13440	21.33	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-1
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	13529	13440	0.00	-	0	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-1
gi|199610358|gb|ABWE01001454.1|	GeneWise	match	13437	13405	0.69	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-2
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	13437	13405	0.00	-	0	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-2
gi|199610358|gb|ABWE01001454.1|	GeneWise	match	13402	13253	43.98	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-3
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	13402	13253	0.00	-	0	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-3
gi|199610358|gb|ABWE01001454.1|	GeneWise	match	13238	12109	154.99	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	13238	13091	0.00	-	0	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	intron	13090	13008	0.00	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	13007	12763	0.00	-	2	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	intron	12762	12678	0.00	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	12677	12555	0.00	-	0	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	intron	12554	12486	0.00	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	12485	12367	0.00	-	0	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	intron	12366	12296	0.00	-	.	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
gi|199610358|gb|ABWE01001454.1|	GeneWise	cds	12295	12109	0.00	-	1	gi|199610358|gb|ABWE01001454.1|-genewise-prediction-4
//