TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.13 of Capsaspora owczarzaki ATCC 30864                  357   e-172

>supercontig_1.13 of Capsaspora owczarzaki ATCC 30864
          Length = 955311

 Score =  357 bits (915), Expect(2) = e-172
 Identities = 211/318 (66%), Positives = 218/318 (68%), Gaps = 85/318 (26%)
 Frame = +3

Query: 238    IVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVGGAL 297
              IVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVGGAL
Sbjct: 800973 IVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVGGAL 801152

Query: 298    VAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSLLKQRKVV---------- 347
              VAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSLLKQRKV           
Sbjct: 801153 VAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSLLKQRKVTWILALEFCGF 801332

Query: 348    -----------------------FEQLRAKLGAFAVSQGERLLETPHNPI---------- 374
                                     FEQ  A+L +  V+   + L  P + +          
Sbjct: 801333 ILHTSAQLIYEC*IVLYRLCLNSFEQNSARLPSAKVNGCWKPLTIPFHSV*FKPPLVA*T 801512

Query: 375    -----------SLAITLSTFGSDATRLGSFLFTRCVSGTR-------------------- 403
                          +AITLSTFGSDATRLGSFLFTRCVSGTR                    
Sbjct: 801513 LRCKSPHLCFRPIAITLSTFGSDATRLGSFLFTRCVSGTRCAVALAPGIVLASCL*FSFT 801692

Query: 404    -----------VVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDAL 452
                         VVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDAL
Sbjct: 801693 HFHLEFCIYCSVVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDAL 801872

Query: 453    IDRLTAAFKDLRAAMNQP 470
              IDRLTAAFKDLRAAMNQP
Sbjct: 801873 IDRLTAAFKDLRAAMNQP 801926



 Score =  268 bits (685), Expect(2) = e-172
 Identities = 146/192 (76%), Positives = 146/192 (76%), Gaps = 46/192 (23%)
 Frame = +2

Query: 92     RMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRLAG------------------- 132
              RMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRLAG                   
Sbjct: 800303 RMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRLAGMILCHTVWQHEDQSEIRRK 800482

Query: 133    ---------------------------VHAANACIALPLATGMAMVMTLLTLAQTRPPSA 165
                                         VHAANACIALPLATGMAMVMTLLTLAQTRPPSA
Sbjct: 800483 WTSFLTTSQQPTHNLKQLTIQ*SHWTGVHAANACIALPLATGMAMVMTLLTLAQTRPPSA 800662

Query: 166    RKVLWLRIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVS 225
              RKVLWLRIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVS
Sbjct: 800663 RKVLWLRIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVS 800842

Query: 226    TTSCFAPRCPDR 237
              TTSCFAPRCPDR
Sbjct: 800843 TTSCFAPRCPDR 800878



 Score = 80.1 bits (196), Expect(3) = 5e-38
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +3

Query: 1      MDTEINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQ 40
              MDTEINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQ
Sbjct: 799692 MDTEINQNLAKDILGNDAYIQQGADAIRTRQNLVKSLLAQ 799811



 Score = 67.8 bits (164), Expect(3) = 5e-38
 Identities = 31/33 (93%), Positives = 31/33 (93%)
 Frame = +1

Query: 37     LLAQRKWPELGWDEMSIELLLSDLAQMDSNNFP 69
              L  QRKWPELGWDEMSIELLLSDLAQMDSNNFP
Sbjct: 799918 LSRQRKWPELGWDEMSIELLLSDLAQMDSNNFP 800016



 Score = 49.3 bits (116), Expect(3) = 5e-38
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +3

Query: 70     ANIGAGEREARVYSDLVARRHFR 92
              ANIGAGEREARVYSDLVARRHFR
Sbjct: 800094 ANIGAGEREARVYSDLVARRHFR 800162


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,431,065
Number of Sequences: 89
Number of extensions: 245196
Number of successful extensions: 1605
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 675
length of query: 470
length of database: 9,347,932
effective HSP length: 103
effective length of query: 367
effective length of database: 9,338,765
effective search space: 3427326755
effective search space used: 3427326755
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)