TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...   384   e-107

>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score =  384 bits (986), Expect = e-107
 Identities = 205/455 (45%), Positives = 287/455 (63%), Gaps = 4/455 (0%)
 Frame = +2

Query: 14     LGNDAYIQQGADAIRTRQNLVKSLLAQRKWPELGWDEMSIELLLSDLAQMDSNNFPANIG 73
              L + AY+     A R+R  L + LL QR+    G DE ++ LL+ +LA +D+N F     
Sbjct: 427271 LADPAYVTVAEAARRSRTALFRQLLTQRRLLPQGLDEHTVRLLVDELAGLDANQFIDQAN 427450

Query: 74     AGEREARVYSDLVARRHFRMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRLAGV 133
               GERE R+YS+LV  RHF MAHG+GR+GD+AA QPKA G+S++++L   + LD + +AG 
Sbjct: 427451 VGEREGRIYSELVRARHFGMAHGMGRAGDLAASQPKACGASILVRLCAALLLDALHVAGF 427630

Query: 134    HAANACIALPLATGMAMVMTLLTLAQTRPPSARKVLWLRIDQKSCIKAITACGFEVVVVD 193
               +      LP+ATGMAM + LL L   RP +A +VLW+RIDQK+C+K I A G+++ V++
Sbjct: 427631 RSCRRVALLPIATGMAMTLCLLALRWQRP-AADRVLWIRIDQKACLKCIRAAGYQIDVLE 427807

Query: 194    NAIEGDEVRTDLSALQHQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATESIPHV 253
              N ++GD+V TD+ AL+ ++          ++STTSCFAPR PDR+V IA++CA   IPH+
Sbjct: 427808 NKLDGDQVVTDMEALEKRLAASDPSRYAAVISTTSCFAPRAPDRVVAIAQLCARYGIPHL 427987

Query: 254    INNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVGGALVAGHDRAFIKRIGEMY 313
              IN+AYG+QS +   L+  A + GRVDA + S DKN MVPVGGA VAG    FI+ +  +Y
Sbjct: 427988 INHAYGVQSRRCNGLVCAACRLGRVDAVIFSFDKNFMVPVGGAGVAGTSPTFIEAVESLY 428167

Query: 314    PGRASAAPSVDIFITLLSMGQQGFRSLLKQRKVVFEQLRAKLGAFAVSQGERLLETPHNP 373
              PGRAS AP VD+FITLL +G+ GF  LL++R+  F++ +A+L       GERLL TP NP
Sbjct: 428168 PGRASVAPVVDLFITLLQLGRDGFSGLLRERERRFQRFQAQLAPVLAKHGERLLHTPDNP 428347

Query: 374    ISLAI----TLSTFGSDATRLGSFLFTRCVSGTRVVAADRAAATTSVGPVSLSNFGAHHS 429
              IS AI    T+   G + T +GS L+ R  SG R V          V  V L+ +GAH +
Sbjct: 428348 ISFAISLEHTMLEGGIEPTAIGSMLYARRCSGPRAVLGTERRL---VQGVLLAGYGAHIA 428518

Query: 430    AYHGAYLTAAAAIGMTEQEVDALIDRLTAAFKDLR 464
               Y   YL  AAAIG+ + +++    RL      +R
Sbjct: 428519 DYPVPYLNLAAAIGIRDIDIERFCRRLDEVLGQVR 428623


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,897,716
Number of Sequences: 20
Number of extensions: 135907
Number of successful extensions: 892
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 96
length of query: 470
length of database: 5,515,582
effective HSP length: 99
effective length of query: 371
effective length of database: 5,513,602
effective search space: 2045546342
effective search space used: 2045546342
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)