TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-t...   326   1e-89

>emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome shotgun
               sequence assembly, scaffold_1
          Length = 1866585

 Score =  326 bits (836), Expect = 1e-89
 Identities = 197/491 (40%), Positives = 276/491 (56%), Gaps = 48/491 (9%)
 Frame = -2

Query: 19      YIQQGADAIRTRQNLVKSLLAQRKWPELGWDEMSIE---------------LLLSDLAQM 63
               Y+ QG DAI+ R+NLVK LL  RK PE+GWD+ SIE                 LS  A  
Sbjct: 1211561 YVNQGRDAIKRRENLVKDLLTHRKIPEIGWDDQSIE*KTIPLYSRLDFS*TTFLSWTAIT 1211382

Query: 64      DSNNFPANIGAGEREARVYSDLV-----ARRHFRMAHGIGRSG----------DIAAIQP 108
                     +    GE  A  Y  ++      +  F        SG          D   + P
Sbjct: 1211381 SWGIAESVSVKGELRALWYYAMILCLSGCQASFLSCSWNWESG*CGCNPSKT*DHVEL*P 1211202

Query: 109     KAAGSSLIMKLVNIMCLDVIRLAGVHAANACIALPLATGMAMVMTLLTLAQTRPPSARKV 168
               KAAGSSLI +L   M +D I+  G+     CI LPLATGM++ M LL+L +   P+A+ V
Sbjct: 1211201 KAAGSSLICELTRKMAVDFIQTCGITEVKDCIVLPLATGMSISMCLLSL-RLNNPTAKYV 1211025

Query: 169     LWLRIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVSTTS 228
               +W R+DQK+C+K+I   G E +++D   EGDE+ T+L AL+ ++ ++ ++ ILCI+ TTS
Sbjct: 1211024 IWFRVDQKTCLKSILTTGLEPIIIDPVPEGDELNTNLGALREKLESIKREEILCIIPTTS 1210845

Query: 229     CFAPRCPDRIVEIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKN 288
                FAPR PD IV ++K+    S+P ++NNAYG+QS      I  A + GR+D  V S+DKN
Sbjct: 1210844 VFAPRLPDDIVGVSKLAKEFSVPVIVNNAYGLQSGATCKAIDRAIRVGRIDMLVSSTDKN 1210665

Query: 289     LMVPVGGALVAGHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSLLKQRKVVF 348
               ++VPVGGALV       +  + + YPGRAS +P +D+FITLLSMG++  RS+LK+R+  +
Sbjct: 1210664 MLVPVGGALVYSPQSGMVDLVRKNYPGRASMSPILDVFITLLSMGKRELRSVLKEREDCY 1210485

Query: 349     EQLRAKLGAFAVSQGERLLETPHNPISLAITLST----------FGSDATRLGSFLFTRC 398
               + L  +LG  A    +R+L TP NPIS+A+TL               D T+ G+ L+TR 
Sbjct: 1210484 QYLLDRLGEVAGRYKQRVLRTPRNPISIAVTLDNPFPEDDSFEYSDEDITKFGAMLYTRG 1210305

Query: 399     VSGTRVV-----AADRAAA---TTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVD 450
               VSG RVV        R        SVG    +N+G H   Y  AY T+AAAIG+ ++E+D
Sbjct: 1210304 VSG-RVVEIV*SIGSRCVGFHNKKSVGKYEFANYGGHTDHYPHAYFTSAAAIGVKKEEID 1210128

Query: 451     ALIDRLTAAFK 461
                 IDRL   +K
Sbjct: 1210127 VFIDRLEKNWK 1210095


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,851,101
Number of Sequences: 54
Number of extensions: 122242
Number of successful extensions: 610
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 150
length of query: 470
length of database: 6,272,415
effective HSP length: 100
effective length of query: 370
effective length of database: 6,267,015
effective search space: 2318795550
effective search space used: 2318795550
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)