TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|320165142|gb|EFW42041.1| sec tRNA synthase [Capsaspora
owczarzaki ATCC 30864]
         (470 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01001948.1| Ascogregarina taiwanensis Contig2203, whole g...   105   1e-23
gb|ABJQ01004237.1| Ascogregarina taiwanensis CLRanP168-C06.b1.ab...    50   6e-07

>gb|ABJQ01001948.1| Ascogregarina taiwanensis Contig2203, whole genome shotgun sequence
          Length = 1135

 Score =  105 bits (261), Expect = 1e-23
 Identities = 81/232 (34%), Positives = 98/232 (42%), Gaps = 87/232 (37%)
 Frame = +2

Query: 38  LAQRKWPELGWDEMSIELLLSDLAQMDS-------------------------------N 66
           L QR+ P+  WDE+SI LLL +LA MD                                N
Sbjct: 2   LHQRRVPDEPWDELSITLLLQELAGMDM*EIWRRCMG*GIWRGRADPLFRGFAY*LAHRN 181

Query: 67  NFPANIGAGEREARVYSDLVARRHFRMAHGIG------------RSGDIAAIQPKAAGSS 114
           N     GAGERE R++S LV RRHF M+HGIG            RSGDI A+QPKAAGSS
Sbjct: 182 NACRVAGAGEREGRIFSPLVYRRHFGMSHGIGRLYLFYAGSSICRSGDIMALQPKAAGSS 361

Query: 115 LIMKLVNIMCLDVIRLAGVH---------------------------------------- 134
           LI  L   + LD+IR AG+                                         
Sbjct: 362 LINILSQYLVLDIIREAGIKVSDKSMQSNSLVLVQAHKCATSQSGMLNLYGFRKLQLSDR 541

Query: 135 ----AANACIALPLATGMAMVMTLLTLAQTRPPSARKVLWLRIDQKSCIKAI 182
               +A  C+ LP+ATGM +   L    Q        +LW RIDQKSC KA+
Sbjct: 542 LLF*SAAGCLVLPMATGMTLHFCLSQFHQ-----GSDILWSRIDQKSCFKAM 682


>gb|ABJQ01004237.1| Ascogregarina taiwanensis CLRanP168-C06.b1.ab1, whole genome
           shotgun sequence
          Length = 818

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +2

Query: 397 RCVSGTRVVAADRAAATTSVGPVSLSNFGAHHSAYH--GAYLTAAAAIGMTEQEVDALID 454
           RC SG RVV  +     + +G     NFG+HH  Y   GAYLTAA A+G + +E+D   +
Sbjct: 110 RC-SGARVVECN--GKKSEIGGYQFRNFGSHHDNYTVTGAYLTAACAMGASVEEIDLFTE 280

Query: 455 RLTAAFKD 462
           RL A  K+
Sbjct: 281 RLEAILKE 304


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.321    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,098,073
Number of Sequences: 5379
Number of extensions: 43397
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 470
length of database: 2,049,803
effective HSP length: 91
effective length of query: 379
effective length of database: 1,560,314
effective search space: 591359006
effective search space used: 591359006
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)