TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sp|Q9VKY8|SPS2_DROME Selenide, water dikinase 2 OS=Drosophila
melanogaster GN=Sps2 PE=2 SV=3
         (370 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    59   3e-09

>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 79/342 (23%), Positives = 136/342 (39%), Gaps = 40/342 (11%)
 Frame = -2

Query: 57     DCAVIPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVS 116
              D AV  L       ++QT+D+F  +V DP   G+I   + LSD++A+G T    + + V+
Sbjct: 128646 DAAVQILPNKAGGAIVQTIDYFREIVKDPFTFGKIVAVHALSDIHAMGATPQTAMTLAVA 128467

Query: 117    TSTSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEE 176
                 +  E     ++ L + G  + L+     N  L+            G        + +
Sbjct: 128466 PFAADEEVTESTLLHL-LSGVSDILQDE---NVQLVGGHTCEGLELACGLSVQGYTDNPK 128299

Query: 177    IILPSNAQP-GDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVK 235
              ++L       GD +VLTKP+G      A +             + C  + + E    A+ 
Sbjct: 128298 LLLRKQGGAIGDKIVLTKPIGTGALFAADM------------RARCKGSYMSE----ALD 128167

Query: 236    SMTYLNKNAA-LLMHKYQAHCATDITGFGLLGHA-------NNLAQFQKEKVLFQINKLP 287
              SM + N +A+ + M        TD+TGFGL+GH          + +      +  I  + 
Sbjct: 128166 SMIHSNCHASQVAMRAKGIRSCTDVTGFGLIGHLLEMLMANETVKELDSIGAVVNIGDID 127987

Query: 288    IIKNVLK------FSTLVGQSTKFRSGRSV--------------------ETSGGLLICL 321
               ++  L+      FSTL  QS   R+ R++                    +T+GGL+  +
Sbjct: 127986 FLRGGLEASANGIFSTL--QSQNGRNRRAIVNHTEAAEKYPVKYPLLFDPQTAGGLMFFV 127813

Query: 322    PADAADKFCRDFEEA-----TNGEQKSFQIGHVTAANESDAV 358
               A +A +F  +   A       GE  S+      AA  S++V
Sbjct: 127812 DALSASEFLAELRAADVNAHIVGELVSYPAESNAAAGFSESV 127687


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,113,174
Number of Sequences: 31
Number of extensions: 125475
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 55
length of query: 370
length of database: 7,911,228
effective HSP length: 100
effective length of query: 270
effective length of database: 7,908,128
effective search space: 2135194560
effective search space used: 2135194560
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)