TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40787830|gb|AAH65165.1| Selenophosphate synthetase 1 [Mus
musculus]
         (392 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   287   7e-78

>gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3,
              whole genome shotgun sequence
          Length = 673526

 Score =  287 bits (735), Expect = 7e-78
 Identities = 156/313 (49%), Positives = 205/313 (65%), Gaps = 8/313 (2%)
 Frame = -3

Query: 66     IGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML 125
              IG+D  +IP    G+  +QTTDY YP+V+DPY  GRIACANVLSDL+AMG++ CD MLM+
Sbjct: 663822 IGLDCSIIPTAIEGVVTIQTTDYFYPLVEDPYQQGRIACANVLSDLFAMGISRCDTMLMI 663643

Query: 126    LGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC-QPNE 184
              L  S +M   +R  V   +I+GF D A EAGTSVTGGQTVLNPW ++GGVA+ V      
Sbjct: 663642 LAASLEMPKDQRMIVTRELIRGFNDLATEAGTSVTGGQTVLNPWPIIGGVASAVVPSDGG 663463

Query: 185    FIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPE------KWNKIKLVVTQEDVELVYQ 238
              +I P + VPGDV+VLTKP+GTQVAV  +QWL   E       W+ I  V++     + + 
Sbjct: 663462 YIDPFSLVPGDVMVLTKPIGTQVAVNAYQWLGDHEAGKEGSNWDLIADVLSPAQARVAFA 663283

Query: 239    EAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAK 298
               A  +MARLN++ A LM    AH ATD+TGFG+LGHA+NLA+ Q+  V   IH LPV+  
Sbjct: 663282 LASASMARLNKSGAALMVKHGAHGATDVTGFGLLGHARNLAEHQKAAVHISIHTLPVIEN 663103

Query: 299    MAAVSKACGNMFGLMHGTCPETSGGLLICLP-REQAARFCAEIKSPKYGEGHQAWIIGIV 357
              M AV+      F L+ G   ETSGGLL+ LP  + AA FCA+I++    +G  AWI+G V
Sbjct: 663102 MPAVNDKFN--FKLLDGWSSETSGGLLVALPSADAAAAFCADIEAE---DGWPAWIVGSV 662938

Query: 358    EKGNRTARIIDKP 370
                G+ +A I++ P
Sbjct: 662937 SAGSGSADIVENP 662899


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,416,143
Number of Sequences: 131
Number of extensions: 240604
Number of successful extensions: 1036
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 184
length of query: 392
length of database: 9,560,209
effective HSP length: 101
effective length of query: 291
effective length of database: 9,546,978
effective search space: 2778170598
effective search space used: 2778170598
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)